Mercurial > repos > bgruening > glimmer_hmm

diff glimmerHMM/glimmerhmm_to_sequence.xml @ 1:4da91bb244dc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/glimmer_hmm commit 2effed877a778e455c63a76e994a0f2bb8f4dba0
author rmarenco
date Thu, 14 Jul 2016 15:11:33 -0400
parents c9699375fcf6
children
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--- a/glimmerHMM/glimmerhmm_to_sequence.xml	Wed Jul 13 10:55:48 2016 -0400
+++ b/glimmerHMM/glimmerhmm_to_sequence.xml	Thu Jul 14 15:11:33 2016 -0400
@@ -1,13 +1,10 @@
 <tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
     <description>converter</description>
-    <command interpreter='python'>
-<![CDATA[
-    glimmerhmm_to_sequence.py
-        $glimmerhmm_input
-        $genome_input
-        $output
-        $to_protein
-]]>
+    <command interpreter='python'>glimmerhmm_to_sequence.py 
+    $glimmerhmm_input
+    $genome_input
+    $output
+    $to_protein
     </command>
     <inputs>
         <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
@@ -18,12 +15,10 @@
         <data name="output" format="fasta" />
     </outputs>
     <help>
-<![CDATA[
 
 **What it does**
 
 It converts the GlimmerHMM GFF output to a Fasta File.
 
-]]>
     </help>
 </tool>