Mercurial > repos > bgruening > hicexplorer_chicsignificantinteractions

annotate test-data/raw_qc_report_micro-c @ 11:ff1af7bac1cb draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
author iuc
date Thu, 05 Dec 2024 18:48:12 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
11
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
1
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
2 File matrix.cool
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
3 Sequenced reads 983
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
4 Max library insert size 1000
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
5
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
6 # count (percentage w.r.t. total sequenced reads)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
7 Pairs mappable, unique and high quality 300 (30.52)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
8 Hi-C contacts 215 (21.87)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
9 One mate unmapped 506 (51.48)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
10 One mate not unique 13 (1.32)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
11 Low mapping quality 164 (16.68)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
12
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
13 # count (percentage w.r.t. mappable, unique and high quality pairs)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
14 same fragment 85 (28.33)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
15 duplicated pairs 0 (0.00)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
16
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
17 # count (percentage w.r.t. total valid pairs used)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
18 inter chromosomal 24 (11.16)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
19 Intra short range (< 20kb) 61 (28.37)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
20 Intra long range (>= 20kb) 130 (60.47)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
21 Read pair type: inward pairs 42 (19.53)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
22 Read pair type: outward pairs 66 (30.70)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
23 Read pair type: left pairs 48 (22.33)
ff1af7bac1cb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 69bb60ab875c1c1769298678f0890d8b92f1899d
iuc
parents:
diff changeset
24 Read pair type: right pairs 35 (16.28)