Mercurial > repos > bgruening > hicexplorer_hicaverageregions

comparison hicAverageRegions.xml @ 1:d4aa0255c1eb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:43:33 -0500
parents f7c0aedd4be3
children 4b6a36c18e5e
comparison
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0:f7c0aedd4be3 1:d4aa0255c1eb
15 #if $rangeFormat_conditional.rangeFormat_selector == 'optionGenomicUnits': 15 #if $rangeFormat_conditional.rangeFormat_selector == 'optionGenomicUnits':
16 --range '$rangeFormat_conditional.upstreamRange' '$rangeFormat_conditional.downstreamRange' 16 --range '$rangeFormat_conditional.upstreamRange' '$rangeFormat_conditional.downstreamRange'
17 #else: 17 #else:
18 --rangeInBins '$rangeFormat_conditional.upstreamRange' '$rangeFormat_conditional.downstreamRange' 18 --rangeInBins '$rangeFormat_conditional.upstreamRange' '$rangeFormat_conditional.downstreamRange'
19 #end if 19 #end if
20 --coordinatesToBinMapping $coordinatesToBinMapping_selector
20 --outFileName output_matrix.npz 21 --outFileName output_matrix.npz
21 22
22 ]]> 23 ]]>
23 </command> 24 </command>
24 <inputs> 25 <inputs>
39 <when value="optionBinUnits"> 40 <when value="optionBinUnits">
40 <param name="upstreamRange" type="integer" value="" label="Upstream range"/> 41 <param name="upstreamRange" type="integer" value="" label="Upstream range"/>
41 <param name="downstreamRange" type="integer" value="" label="Downstream range"/> 42 <param name="downstreamRange" type="integer" value="" label="Downstream range"/>
42 </when> 43 </when>
43 </conditional> 44 </conditional>
45 <param name="coordinatesToBinMapping_selector" type="select" label="Define start value of range" help="If the region contains start and end coordinates, define if the start, center (start + (end-start) / 2) or end bin should be used as start for range.">
46 <option value="start">Start</option>
47 <option value="center" selected="True">Center</option>
48 <option value="end" selected="True">End</option>
49 </param>
44 </inputs> 50 </inputs>
45 <outputs> 51 <outputs>
46 <data name="outFileName" from_work_dir="output_matrix.npz" format="zip"/> 52 <data name="outFileName" from_work_dir="output_matrix.npz" format="zip"/>
47 </outputs> 53 </outputs>
48 <tests> 54 <tests>