Mercurial > repos > bgruening > hicexplorer_hicaverageregions

diff hicAverageRegions.xml @ 1:d4aa0255c1eb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 5744259254d4254a29cb7a6687fbbfd103301064"
author bgruening
date Wed, 05 Feb 2020 19:43:33 -0500
parents f7c0aedd4be3
children 4b6a36c18e5e
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line diff
--- a/hicAverageRegions.xml	Mon Dec 16 15:21:06 2019 -0500
+++ b/hicAverageRegions.xml	Wed Feb 05 19:43:33 2020 -0500
@@ -17,6 +17,7 @@
         #else:
             --rangeInBins '$rangeFormat_conditional.upstreamRange' '$rangeFormat_conditional.downstreamRange'
         #end if
+        --coordinatesToBinMapping $coordinatesToBinMapping_selector
         --outFileName output_matrix.npz
 
 ]]>
@@ -41,6 +42,11 @@
                  <param name="downstreamRange" type="integer" value="" label="Downstream range"/>
             </when>
         </conditional>
+        <param name="coordinatesToBinMapping_selector" type="select" label="Define start value of range" help="If the region contains start and end coordinates, define if the start, center (start + (end-start) / 2) or end bin should be used as start for range.">
+                <option value="start">Start</option>
+                <option value="center" selected="True">Center</option>
+                <option value="end" selected="True">End</option>
+        </param>
     </inputs>
     <outputs>
         <data name="outFileName" from_work_dir="output_matrix.npz" format="zip"/>