Mercurial > repos > bgruening > hicexplorer_hicbuildmatrix

comparison macros.xml @ 2:eb0d14cdf8b8 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit 4d61b6bf2fed275ab38c226d0c4390b095a38251
author bgruening
date Thu, 02 Nov 2017 11:11:01 -0400
parents 3d56e784d0bd
children 2a13bfe5bff2
comparison
equal deleted inserted replaced
1:3d56e784d0bd 2:eb0d14cdf8b8
1 <macros> 1 <macros>
2 <xml name="stdio"> 2 <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token>
3 <stdio> 3 <token name="@WRAPPER_VERSION@">1.8</token>
4 <exit_code range="1:" />
5 <exit_code range=":-1" />
6 <regex match="Error:" />
7 <regex match="Exception:" />
8 <regex match="EXception:" />
9 <regex match="Traceback" />
10 </stdio>
11 </xml>
12
13 <token name="@THREADS@">--numberOfProcessors "\${GALAXY_SLOTS:-4}"</token>
14 <token name="@WRAPPER_VERSION@">1.7.2</token>
15 <xml name="requirements"> 4 <xml name="requirements">
16 <requirements> 5 <requirements>
17 <requirement type="package" version="2.7.13">python</requirement>
18 <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement> 6 <requirement type="package" version="@WRAPPER_VERSION@">hicexplorer</requirement>
19 <yield /> 7 <yield />
20 </requirements> 8 </requirements>
21 <expand macro="stdio" />
22 <version_command>@BINARY@ --version</version_command> 9 <version_command>@BINARY@ --version</version_command>
23 </xml> 10 </xml>
24 11
25 <xml name="citations"> 12 <xml name="citations">
26 <citations> 13 <citations>
323 310
324 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_. 311 This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for Immunobiology and Epigenetics`_.
325 312
326 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/ 313 .. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/
327 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de 314 .. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de
328 .. _help site: https://github.com/fidelram/deepTools/wiki/ 315 .. _help site: https://hicexplorer.readthedocs.org
329 316
330 </token> 317 </token>
331 318
332 319
333 <xml name="multiple_input_bams"> 320 <xml name="multiple_input_bams">
535 )) 522 ))
536 </filter> 523 </filter>
537 </data> 524 </data>
538 </xml> 525 </xml>
539 526
540 527 <xml name="track_input_h5_macro">
541 528 <param name="track_input_h5" type="data" format="h5" label="Track file h5 format"/>
529 </xml>
530 <xml name="track_input_bed_macro">
531 <param name="track_input_bed" type="data" format="bed" label="Track file bed format"/>
532 </xml>
533 <xml name="track_input_bedgraph_macro">
534 <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format"/>
535 </xml>
536 <xml name="track_input_bigwig_macro">
537 <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format"/>
538 </xml>
539 <xml name="track_input_bedgraph_matrix_macro">
540 <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format"/>
541 </xml>
542 <xml name="track_input_tabular_macro">
543 <param name="track_input_tabular" type="data" format="tabular" label="Track file tabular format"/>
544 </xml>
545 <xml name="plot_title">
546 <param name="title" type="text" optional="true" label="Plot title"/>
547 </xml>
548
549 <xml name="spacer_macro">
550 <param name="spacer_width" type="float" value="" optional="True"
551 label="Include spacer at the end of the track." help="Width of the spacer." />
552 </xml>
553 <xml name="fontsize_macro">
554 <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" />
555 </xml>
542 </macros> 556 </macros>