Mercurial > repos > bgruening > hicexplorer_hichyperoptdetectloops
diff test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report @ 0:dde6b320a34b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 55de003830db380639df997cdc5810df8022f63e"
| author | bgruening |
|---|---|
| date | Tue, 16 Mar 2021 20:14:14 +0000 |
| parents | |
| children | 7f7c6ead2d0d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cHi-C/chicQualityControl/new_referencepoints.bed_report Tue Mar 16 20:14:14 2021 +0000 @@ -0,0 +1,13 @@ +# Created with chicQualityControl version 3.6 +# QC report for matrices: 0_matrix.cool 1_matrix.cool +#Sparsity threshold for rejection: sparsity <= 0.05 are rejected. + +Number of reference points: 43 +Number of accepted reference points: 35 +Number of rejected reference points: 8 +Number of faulty reference points: 0 + + +A faulty reference point is caused by the non-presence of the chromosome in one of the given matrices. +It can also be caused by the non-presence of valid Hi-C reads in a region, especially at the chromosome ends. +Please check the results of hicInfo to validate this for your data.