Mercurial > repos > bgruening > hicexplorer_hicsummatrices

comparison hicSumMatrices.xml @ 4:d387dacb6867 draft

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planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dfa5a68cb20842407941c7ffda9ef956a0e86a04
author iuc
date Sat, 16 Dec 2017 16:35:53 -0500
parents 2bbe234ca6ce
children b9f41afc3312
comparison
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3:fd99ba440633 4:d387dacb6867
29 <param name="matrices" value="hicCorrectMatrix_result1.npz.h5,hicCorrectMatrix_result1.npz.h5"/> 29 <param name="matrices" value="hicCorrectMatrix_result1.npz.h5,hicCorrectMatrix_result1.npz.h5"/>
30 <output name="outFileName" file="hicSumMatrices_result1.npz.h5" ftype="h5" compare="sim_size" delta="70000"/> 30 <output name="outFileName" file="hicSumMatrices_result1.npz.h5" ftype="h5" compare="sim_size" delta="70000"/>
31 </test> 31 </test>
32 </tests> 32 </tests>
33 <help><![CDATA[ 33 <help><![CDATA[
34 Summation of matrices
35 =====================
34 36
35 **What it does** 37 ``hicSumMatrix`` is combining two (or more) contact matrices of the same size to one.
38 This is useful if replicates of an Hi-C experiment should be merged into one contact matrix to
39 increase the power of the data. It is the nature of Hi-C that real contact cannot be distinguished
40 from noise, especially with a low contact count. The more contacts are given, the more likely it is
41 that a high number of contacts are real contact or contain at least a high amount. Therefore it is
42 a common way to merge replicates of Hi-C experiments to increase the validity of the experiment.
36 43
37 Combines Hi-C matrices of the same size. 44 Input
45 -----
38 46
47 Parameters
48 __________
49 - two or matrices of the same shape.
50
51 Output
52 ------
53 The summed matrix.
54
55 | For more information about HiCExplorer please consider our documentation on readthedocs.io_
56
57 .. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html
39 ]]></help> 58 ]]></help>
40 <expand macro="citations" /> 59 <expand macro="citations" />
41 </tool> 60 </tool>