Mercurial > repos > bgruening > hicexplorer_hicsummatrices
diff hicSumMatrices.xml @ 4:d387dacb6867 draft
planemo upload for repository https://github.com/maxplanck-ie/HiCExplorer/tree/master/galaxy/wrapper/ commit dfa5a68cb20842407941c7ffda9ef956a0e86a04
author | iuc |
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date | Sat, 16 Dec 2017 16:35:53 -0500 |
parents | 2bbe234ca6ce |
children | b9f41afc3312 |
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--- a/hicSumMatrices.xml Mon Nov 27 11:17:35 2017 -0500 +++ b/hicSumMatrices.xml Sat Dec 16 16:35:53 2017 -0500 @@ -31,11 +31,30 @@ </test> </tests> <help><![CDATA[ +Summation of matrices +===================== -**What it does** +``hicSumMatrix`` is combining two (or more) contact matrices of the same size to one. +This is useful if replicates of an Hi-C experiment should be merged into one contact matrix to +increase the power of the data. It is the nature of Hi-C that real contact cannot be distinguished + from noise, especially with a low contact count. The more contacts are given, the more likely it is + that a high number of contacts are real contact or contain at least a high amount. Therefore it is + a common way to merge replicates of Hi-C experiments to increase the validity of the experiment. -Combines Hi-C matrices of the same size. +Input +----- + +Parameters +__________ +- two or matrices of the same shape. +Output +------ +The summed matrix. + +| For more information about HiCExplorer please consider our documentation on readthedocs.io_ + +.. _readthedocs.io: http://hicexplorer.readthedocs.io/en/latest/index.html ]]></help> <expand macro="citations" /> </tool>