Mercurial > repos > bgruening > hicup_mapper

comparison test-data/dataset.contiguous.filter.sam @ 0:9ba09ebeb5aa draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
author bgruening
date Thu, 09 Mar 2017 09:32:26 -0500
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-1:000000000000 0:9ba09ebeb5aa
1 @HD VN:1.0 SO:unsorted
2 @SQ SN:chr1 LN:199950
3 @PG ID:bowtie2 PN:bowtie2 VN:2.3.0 CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
4 @PG ID:HiCUP Mapper VN:0.5.9
5 @PG ID:HiCUP Truncater VN:0.5.9 DS:"Restriction enzyme --re1 A^AGCTT"
6 @PG ID:HiCUP Filter VN:0.5.9 DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"