Mercurial > repos > bgruening > hicup_mapper

diff test-data/dataset.contiguous.filter.sam @ 0:9ba09ebeb5aa draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
author bgruening
date Thu, 09 Mar 2017 09:32:26 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/dataset.contiguous.filter.sam	Thu Mar 09 09:32:26 2017 -0500
@@ -0,0 +1,6 @@
+@HD	VN:1.0	SO:unsorted
+@SQ	SN:chr1	LN:199950
+@PG	ID:bowtie2	PN:bowtie2	VN:2.3.0	CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
+@PG	ID:HiCUP Mapper	VN:0.5.9
+@PG	ID:HiCUP Truncater	VN:0.5.9	DS:"Restriction enzyme --re1 A^AGCTT"
+@PG	ID:HiCUP Filter	VN:0.5.9	DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"