Mercurial > repos > bgruening > hicup_mapper

comparison hicup_mapper.xml @ 7:be104dee2833 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hicup commit 398a2e3e845ada656b3a7e0a6542e1668a8bcf17
author bgruening
date Thu, 23 Feb 2023 18:07:06 +0000
parents 396e8c4ebfee
children
comparison
equal deleted inserted replaced
6:70427be35bf2 7:be104dee2833
53 <assert_contents> 53 <assert_contents>
54 <has_text_matching expression="\s+99742\s+2658\s+2.7\s+3885\s+3.9\s+12437\s+12.5\s+80762\s+81.0\s+1143\s+1.1"/> 54 <has_text_matching expression="\s+99742\s+2658\s+2.7\s+3885\s+3.9\s+12437\s+12.5\s+80762\s+81.0\s+1143\s+1.1"/>
55 <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/> 55 <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/>
56 </assert_contents> 56 </assert_contents>
57 </output> 57 </output>
58 <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="4" ftype="qname_sorted.bam"/> 58 <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="5" ftype="qname_sorted.bam"/>
59 <output_collection name="mapper_barchart" count="2"> 59 <output_collection name="mapper_barchart" count="2">
60 <element name="dataset1.fq.gz" file="dataset1.mapper_barchart.svg" ftype="svg" compare="sim_size"/> 60 <element name="dataset1.fq.gz" file="dataset1.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
61 <element name="dataset2.fq.gz" file="dataset2.mapper_barchart.svg" ftype="svg" compare="sim_size"/> 61 <element name="dataset2.fq.gz" file="dataset2.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
62 </output_collection> 62 </output_collection>
63 </test> 63 </test>
64 <test> 64 <test>
65 <conditional name="library"> 65 <conditional name="library">
66 <param name="type" value="paired_collection"/> 66 <param name="type" value="paired_collection"/>
79 <assert_contents> 79 <assert_contents>
80 <has_text_matching expression="\s+99742\s+2658\s+2.7\s+3885\s+3.9\s+12437\s+12.5\s+80762\s+81.0\s+1143\s+1.1"/> 80 <has_text_matching expression="\s+99742\s+2658\s+2.7\s+3885\s+3.9\s+12437\s+12.5\s+80762\s+81.0\s+1143\s+1.1"/>
81 <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/> 81 <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/>
82 </assert_contents> 82 </assert_contents>
83 </output> 83 </output>
84 <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="4" ftype="qname_sorted.bam"/> 84 <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="5" ftype="qname_sorted.bam"/>
85 <output_collection name="mapper_barchart" count="2"> 85 <output_collection name="mapper_barchart" count="2">
86 <element name="dataset1.fq.gz" file="dataset1.mapper_barchart.svg" ftype="svg" compare="sim_size"/> 86 <element name="dataset1.fq.gz" file="dataset1.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
87 <element name="dataset2.fq.gz" file="dataset2.mapper_barchart.svg" ftype="svg" compare="sim_size"/> 87 <element name="dataset2.fq.gz" file="dataset2.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
88 </output_collection> 88 </output_collection>
89 </test> 89 </test>
90 </tests> 90 </tests>
91 <help><![CDATA[ 91 <help><![CDATA[
92 92