Mercurial > repos > bgruening > hicup_mapper

diff hicup_mapper.xml @ 7:be104dee2833 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/hicup commit 398a2e3e845ada656b3a7e0a6542e1668a8bcf17
author bgruening
date Thu, 23 Feb 2023 18:07:06 +0000
parents 396e8c4ebfee
children
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line diff
--- a/hicup_mapper.xml	Mon Oct 24 16:17:39 2022 +0000
+++ b/hicup_mapper.xml	Thu Feb 23 18:07:06 2023 +0000
@@ -55,10 +55,10 @@
                     <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/>
                 </assert_contents>
             </output>
-            <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="4" ftype="qname_sorted.bam"/>
+            <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="5" ftype="qname_sorted.bam"/>
             <output_collection name="mapper_barchart" count="2">
-                <element name="dataset1.fq.gz" file="dataset1.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
-                <element name="dataset2.fq.gz" file="dataset2.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
+                <element name="dataset1.fq.gz" file="dataset1.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
+                <element name="dataset2.fq.gz" file="dataset2.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
             </output_collection>
         </test>
         <test>
@@ -81,10 +81,10 @@
                     <has_text_matching expression="\s+99742\s+2476\s+2.5\s+3725\s+3.7\s+12679\s+12.7\s+80862\s+81.1\s+1143\s+1.1"/>
                 </assert_contents>
             </output>
-            <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="4" ftype="qname_sorted.bam"/>
+            <output name="result_pair" file="dataset1_2.pair.bam" lines_diff="5" ftype="qname_sorted.bam"/>
             <output_collection name="mapper_barchart" count="2">
-                <element name="dataset1.fq.gz" file="dataset1.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
-                <element name="dataset2.fq.gz" file="dataset2.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
+                <element name="dataset1.fq.gz" file="dataset1.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
+                <element name="dataset2.fq.gz" file="dataset2.trunc.fastq.gz.mapper_barchart.svg" ftype="svg" compare="sim_size"/>
             </output_collection>
         </test>
     </tests>