Mercurial > repos > bgruening > interproscan

comparison interproscan.xml @ 6:0cd163d805e3 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/interproscan commit 959550b5431b15acf3609f536efc864fd0845b3c"
author iuc
date Wed, 24 Nov 2021 17:44:31 +0000
parents 2e1cf7d85dbc
children 1207025b9b9c
comparison
equal deleted inserted replaced
5:2e1cf7d85dbc 6:0cd163d805e3
110 </param> 110 </param>
111 </inputs> 111 </inputs>
112 112
113 <outputs> 113 <outputs>
114 <data format="tabular" name="outfile_tsv" from_work_dir="output.tsv" label="InterProScan on ${on_string} (tsv)"> 114 <data format="tabular" name="outfile_tsv" from_work_dir="output.tsv" label="InterProScan on ${on_string} (tsv)">
115 <filter>oformat and 'TSV' in outputs</filter> 115 <filter>oformat and 'TSV' in oformat</filter>
116 </data> 116 </data>
117 <data format="xml" name="outfile_xml" from_work_dir="output.xml" label="InterProScan on ${on_string} (xml)"> 117 <data format="xml" name="outfile_xml" from_work_dir="output.xml" label="InterProScan on ${on_string} (xml)">
118 <filter>oformat and 'XML' in outputs</filter> 118 <filter>oformat and 'XML' in oformat</filter>
119 </data> 119 </data>
120 <data format="gff3" name="outfile_gff3" from_work_dir="output.gff3" label="InterProScan on ${on_string} (gff3)"> 120 <data format="gff3" name="outfile_gff3" from_work_dir="output.gff3" label="InterProScan on ${on_string} (gff3)">
121 <filter>oformat and 'GFF3' in outputs</filter> 121 <filter>oformat and 'GFF3' in oformat</filter>
122 </data> 122 </data>
123 <data format="json" name="outfile_json" from_work_dir="output.json" label="InterProScan on ${on_string} (json)"> 123 <data format="json" name="outfile_json" from_work_dir="output.json" label="InterProScan on ${on_string} (json)">
124 <filter>oformat and 'JSON' in outputs</filter> 124 <filter>oformat and 'JSON' in oformat</filter>
125 </data> 125 </data>
126 </outputs> 126 </outputs>
127 127
128 <tests> 128 <tests>
129 <test> 129 <test expect_num_outputs="1">
130 <param name="input" value="prots.fa" /> 130 <param name="input" value="prots.fa" />
131 <param name="seqtype" value="p" /> 131 <param name="seqtype" value="p" />
132 <param name="database" value="5.52-86.0" /> 132 <param name="database" value="5.52-86.0" />
133 <param name="applications" value="MobiDBLite" /> 133 <param name="applications" value="MobiDBLite" />
134 <param name="oformat" value="TSV" /> 134 <param name="oformat" value="TSV" />
139 <has_text text="FUN_000012-T1" /> 139 <has_text text="FUN_000012-T1" />
140 <has_text text="01beedc2fbf8012cba37f0c0d39aa071" /> 140 <has_text text="01beedc2fbf8012cba37f0c0d39aa071" />
141 </assert_contents> 141 </assert_contents>
142 </output> 142 </output>
143 </test> 143 </test>
144 <test> 144 <test expect_num_outputs="4">
145 <param name="input" value="prots.fa" /> 145 <param name="input" value="prots.fa" />
146 <param name="seqtype" value="p" /> 146 <param name="seqtype" value="p" />
147 <param name="database" value="5.52-86.0" /> 147 <param name="database" value="5.52-86.0" />
148 <param name="applications" value="MobiDBLite" /> 148 <param name="applications" value="MobiDBLite" />
149 <param name="oformat" value="TSV,GFF3,XML,JSON" /> 149 <param name="oformat" value="TSV,GFF3,XML,JSON" />
176 <has_text text="disorder_prediction" /> 176 <has_text text="disorder_prediction" />
177 <has_text text="Polyampholyte" /> 177 <has_text text="Polyampholyte" />
178 </assert_contents> 178 </assert_contents>
179 </output> 179 </output>
180 </test> 180 </test>
181 <test> 181 <test expect_num_outputs="4">
182 <param name="input" value="transcripts.fa" /> 182 <param name="input" value="transcripts.fa" />
183 <param name="seqtype" value="n" /> 183 <param name="seqtype" value="n" />
184 <param name="database" value="5.52-86.0" /> 184 <param name="database" value="5.52-86.0" />
185 <param name="applications" value="MobiDBLite" /> 185 <param name="applications" value="MobiDBLite" />
186 <param name="oformat" value="TSV,GFF3,XML,JSON" /> 186 <param name="oformat" value="TSV,GFF3,XML,JSON" />
213 <has_text text="disorder_prediction" /> 213 <has_text text="disorder_prediction" />
214 <has_text text="Polyampholyte" /> 214 <has_text text="Polyampholyte" />
215 </assert_contents> 215 </assert_contents>
216 </output> 216 </output>
217 </test> 217 </test>
218 <test expect_failure="true"> 218 <test expect_failure="true" expect_num_outputs="1">
219 <param name="input" value="prots.fa" /> 219 <param name="input" value="prots.fa" />
220 <param name="seqtype" value="p" /> 220 <param name="seqtype" value="p" />
221 <param name="database" value="5.52-86.0" /> 221 <param name="database" value="5.52-86.0" />
222 <param name="applications" value="MobiDBLite" /> 222 <param name="applications" value="MobiDBLite" />
223 <conditional name="licensed"> 223 <conditional name="licensed">