Mercurial > repos > bgruening > join_files_on_column_fuzzy

annotate join_files_on_column_fuzzy.xml @ 3:22ec3c1a20cd draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
author bgruening
date Tue, 29 May 2018 15:34:31 -0400
parents f2068690addc
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f2068690addc planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 73ccf407098f84351a1bd18438b80023d362b91f
bgruening
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1 <tool id="join_files_on_column_fuzzy" name="Join two files" version="1.0.1">
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64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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2 <description>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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3 on column allowing a small difference
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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4 </description>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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5 <requirements>
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6 <requirement type="package" version="3.6">python</requirement>
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7 </requirements>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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8 <command>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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9 <![CDATA[
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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10 python '$__tool_directory__/join_files_on_column_fuzzy.py'
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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11 --f1 '$f1'
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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12 --f2 '$f2'
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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13 --c1 $c1
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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14 --c2 $c2
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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15 --outfile '$merged_file'
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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16 $header
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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17 $add_distance
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18 #if $merge_mode_select == 'closest':
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64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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19 --closest
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20 #end if:
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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21 --distance $distance
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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22 --unit $units
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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23
0
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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24 ]]>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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25 </command>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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26 <inputs>
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27 <param argument="--f1" type="data" optional="true" format="tabular" label="1st file"
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64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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28 help=""/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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29 <param argument="--c1" type="data_column" data_ref="f1" label="Column to use from 1st file" help="The file needs to be sorted by this column, ascending."/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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30 <param argument="--f2" type="data" optional="true" format="tabular" label="2nd file"
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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31 help=""/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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32 <param argument="--c2" type="data_column" data_ref="f2" label="Column to use from 2nd file" help="The file needs to be sorted by this column, ascending."/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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33
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34 <param argument="--header" type="boolean" checked="false" truevalue="--header" falsevalue="" label="Does the input files contain a header line" />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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35 <param argument="--add_distance" type="boolean" checked="false" truevalue="--add_distance" falsevalue="" label="Add an addional column with the calculated distance." />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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36
1
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37 <param name="merge_mode_select" type="select" label="Choose the mode of merging.">
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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38 <option value="closest" selected="True">Best match (in case of multiple best matches, only the first one is reported)</option>
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22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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39 <option value="distance">All matches within the defined distance</option>
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40 </param>
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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41 <param name="units" display="radio" type="select" value="ppm_value" label="Choose the metrics of your distance"
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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42 help="ppm is useful for very small differences">
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43 <option value="absolute" selected="True">Absolute distance</option>
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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44 <option value="ppm" >Distance in ppm</option>
8750c3125ec5 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit b1763d10a1c39bc6651be891a993989c5a5617ff
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45 </param>
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46 <param name="distance" value="0.2" type="float" label="Allowed distance between the two values that will trigger a merge" help=""/>
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47 </inputs>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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48 <outputs>
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49 <data name="merged_file" format="tabular" />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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50 </outputs>
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51
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52 <tests>
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53 <test>
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54 <param name="f1" value="file1.tab" ftype="tabular"/>
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55 <param name="f2" value="file2.tab" ftype="tabular"/>
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56 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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57 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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58 <param name="merge_mode_select" value="distance"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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59 <param name="distance" value="0.1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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60 <param name="units" value="absolute"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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61 <output name="merged_file" file="no_header_result1.tab" />
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62 </test>
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63 <test>
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64 <param name="f1" value="file1_header.tab" ftype="tabular"/>
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65 <param name="f2" value="file2_header.tab" ftype="tabular"/>
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66 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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67 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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68 <param name="merge_mode_select" value="distance"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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69 <param name="distance" value="0.2"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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70 <param name="units" value="absolute"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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71 <param name="header" value="true"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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72 <output name="merged_file" file="header_result2.tab" />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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73 </test>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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74 <test>
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75 <param name="f1" value="file1_header.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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76 <param name="f2" value="file2_header.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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77 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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78 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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79 <param name="header" value="true"/>
1
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80 <param name="merge_mode_select" value="closest"/>
0
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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81 <output name="merged_file" file="header_closest_result3.tab" />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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82 </test>
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83 <test>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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84 <param name="f1" value="file1_ppm.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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85 <param name="f2" value="file2_ppm.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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86 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
bgruening
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87 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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88 <param name="header" value="false"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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89 <param name="merge_mode_select" value="distance"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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90 <param name="distance" value="100"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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91 <param name="units" value="ppm"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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92 <output name="merged_file" file="no_header_ppm_result4.tab" />
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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93 </test>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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94 <test>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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95 <param name="f1" value="file1_header.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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96 <param name="f2" value="file2_header.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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97 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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98 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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99 <param name="header" value="true"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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100 <param name="closest" value="true"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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101 <param name="add_distance" value="true"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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102 <output name="merged_file" file="header_closest_result5.tab" />
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103 </test>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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104 <test>
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105 <param name="f1" value="file1_ppm.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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106 <param name="f2" value="file2_ppm.tab" ftype="tabular"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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107 <param name="c1" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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108 <param name="c2" value="1"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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109 <param name="header" value="false"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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110 <param name="merge_mode_select" value="distance"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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111 <param name="distance" value="100"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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112 <param name="units" value="ppm"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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113 <param name="add_distance" value="true"/>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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114 <output name="merged_file" file="no_header_ppm_result6.tab" />
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115 </test>
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116 </tests>
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117 <help>
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118 <![CDATA[
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119
3
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120 Join two files on a common column. It is necessary to provide an allowed difference between both values as the maximum absolute difference or maximum parts per million (ppm) for matching.
0
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121
1
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122 Two modes are available:
0
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123
3
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124 1) In the **best match** mode: For each value in file 1 only the best matching value of file 2 is reported. In case of multiple best matches, only the closest match is reported.
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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125 2) In the **all matches** mode: All matches within the defined distance are reported.
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126
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127 Be aware that file 1 is the template file and therefore the same value in file 2 can be matched to multiple values in file 1
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128
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129
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130 ------
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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131
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132 **Example**
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133
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134 **Input file 1** ::
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135
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136 1
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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137 2
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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138 3
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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139 4
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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140 5
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141
0
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142
3
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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143 **Input file 2** ::
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144
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145 1.1
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146 1.2
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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147 2.2
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148 3.3
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149 4.4
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150
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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151
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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152 **Joined file1 and 2** with best match and absolute distance 0.3::
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153
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154 1 1.1 0.1
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155 2 2.2 0.2
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156 3 3.3 0.3
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157
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
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158 **Joined file1 and 2** with all matches and absolute distance 0.3::
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159
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160 1 1.1 0.1
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
bgruening
parents: 2
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161 1 1.2 0.2
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
bgruening
parents: 2
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162 2 2.2 0.2
22ec3c1a20cd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit 3419a5a5e19a93369c8c20a39babe5636a309292
bgruening
parents: 2
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163 3 3.3 0.3
0
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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164
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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165
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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166 ]]>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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167 </help>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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168 <citations>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
bgruening
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169 </citations>
64469e7ecf9f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/join_files_on_column_fuzzy commit fd2bc86108994c9eda731b305ca6a8c71554cfaa
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170 </tool>