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1 Galaxy wrapper for minced
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2 =========================
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3
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4 This wrapper is copyright 2014 by Björn Grüning and Omer Alkhnbashi
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5
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6 MinCED - Mining CRISPRs in Environmental Datasets
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7
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8 MinCED is a program to find Clustered Regularly Interspaced Short Palindromic
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9 Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes,
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10 in which sequence size can be anywhere from 100 to 800 bp. MinCED runs from the
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11 command-line and was derived from CRT (http://www.room220.com/crt/):
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12 Charles Bland et al., CRISPR Recognition Tool (CRT): a tool for automatic
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13 detection of clustered regularly interspaced palindromic repeats, BMC
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14 Bioinformatics 8, no. 1 (2007): 209.
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15
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16 https://github.com/ctSkennerton/minced
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17
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18
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19 Installation
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20 ============
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21
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22 Galaxy should be able to automatically install the dependencies.
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23
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24
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25 History
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26 =======
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27
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28 v0.1 - Initial public release
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29
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30
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31 Licence (MIT)
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32 =============
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33
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34 Permission is hereby granted, free of charge, to any person obtaining a copy
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35 of this software and associated documentation files (the "Software"), to deal
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36 in the Software without restriction, including without limitation the rights
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37 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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38 copies of the Software, and to permit persons to whom the Software is
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39 furnished to do so, subject to the following conditions:
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40
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41 The above copyright notice and this permission notice shall be included in
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42 all copies or substantial portions of the Software.
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43
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44 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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45 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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46 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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47 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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48 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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49 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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50 THE SOFTWARE.
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51
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