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author bgruening
date Mon, 05 May 2014 04:23:26 -0400
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1 Galaxy wrapper for minced
2 =========================
3
4 This wrapper is copyright 2014 by Björn Grüning and Omer Alkhnbashi
5
6 MinCED - Mining CRISPRs in Environmental Datasets
7
8 MinCED is a program to find Clustered Regularly Interspaced Short Palindromic
9 Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes,
10 in which sequence size can be anywhere from 100 to 800 bp. MinCED runs from the
11 command-line and was derived from CRT (http://www.room220.com/crt/):
12 Charles Bland et al., CRISPR Recognition Tool (CRT): a tool for automatic
13 detection of clustered regularly interspaced palindromic repeats, BMC
14 Bioinformatics 8, no. 1 (2007): 209.
15
16 https://github.com/ctSkennerton/minced
17
18
19 Installation
20 ============
21
22 Galaxy should be able to automatically install the dependencies.
23
24
25 History
26 =======
27
28 v0.1 - Initial public release
29
30
31 Licence (MIT)
32 =============
33
34 Permission is hereby granted, free of charge, to any person obtaining a copy
35 of this software and associated documentation files (the "Software"), to deal
36 in the Software without restriction, including without limitation the rights
37 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
38 copies of the Software, and to permit persons to whom the Software is
39 furnished to do so, subject to the following conditions:
40
41 The above copyright notice and this permission notice shall be included in
42 all copies or substantial portions of the Software.
43
44 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
45 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
46 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
47 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
48 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
49 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
50 THE SOFTWARE.
51