Mercurial > repos > bgruening > minced
diff readme.rst @ 0:20f12e7c279b draft
Imported from capsule None
author | bgruening |
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date | Mon, 05 May 2014 04:23:26 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.rst Mon May 05 04:23:26 2014 -0400 @@ -0,0 +1,51 @@ +Galaxy wrapper for minced +========================= + +This wrapper is copyright 2014 by Björn Grüning and Omer Alkhnbashi + +MinCED - Mining CRISPRs in Environmental Datasets + +MinCED is a program to find Clustered Regularly Interspaced Short Palindromic +Repeats (CRISPRs) in full genomes or environmental datasets such as metagenomes, +in which sequence size can be anywhere from 100 to 800 bp. MinCED runs from the +command-line and was derived from CRT (http://www.room220.com/crt/): + Charles Bland et al., CRISPR Recognition Tool (CRT): a tool for automatic + detection of clustered regularly interspaced palindromic repeats, BMC + Bioinformatics 8, no. 1 (2007): 209. + +https://github.com/ctSkennerton/minced + + +Installation +============ + +Galaxy should be able to automatically install the dependencies. + + +History +======= + +v0.1 - Initial public release + + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. +