Mercurial > repos > bgruening > music_deconvolution

diff scripts/inspect.R @ 1:3ca0132c182a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit 683bb72ae92b5759a239b7e3bf4c5a229ed35b54"
author bgruening
date Fri, 26 Nov 2021 15:54:51 +0000
parents 224721e76869
children
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line diff
--- a/scripts/inspect.R	Sun Sep 12 19:48:48 2021 +0000
+++ b/scripts/inspect.R	Fri Nov 26 15:54:51 2021 +0000
@@ -6,17 +6,19 @@
 source(args[1])
 
 printout <- function(text) {
-    if (typeof(text) %in% c("list", "vector")) {
+    if (typeof(text) %in% c("list", "vector", "integer", "double", "numeric")) {
         write.table(text, file = outfile_tab, quote = F, sep = "\t",
                     col.names = NA)
     } else {
         ## text
+        print(typeof(text))
         capture.output(text, file = outfile_tab)  # nolint
     }
 }
 
-if (inspector %in% c("print", "pData", "fData", "dims", "experimentData",
-                     "exprs", "signature", "annotation", "abstract")) {
+if (inspector %in% c("print", "pData", "fData", "dims",
+                     "experimentData", "protocolData", "exprs",
+                     "signature", "annotation", "abstract")) {
     op <- get(inspector)
     tab <- op(rds_eset)
     printout(tab)