Mercurial > repos > bgruening > plotly_parallel_coordinates_plot
comparison paracords_plot.xml @ 0:7b2455348edf draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
author | bgruening |
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date | Sun, 23 Sep 2018 07:52:27 -0400 |
parents | |
children | 7b21a9b5922f |
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1 <tool id="plotly_parallel_coordinates_plot" name="Parallel Coordinates Plot" version="0.1"> | |
2 <description>of tabular data</description> | |
3 <requirements> | |
4 <requirement type="package" version="3.6">python</requirement> | |
5 <requirement type="package" version="0.22.0">pandas</requirement> | |
6 <requirement type="package" version="3.1.1">plotly</requirement> | |
7 </requirements> | |
8 <version_command>echo $version</version_command> | |
9 <command detect_errors="aggressive"><![CDATA[ | |
10 python '$__tool_directory__/paracords_plot.py' | |
11 -i '$infile' | |
12 -d '$col_dimensions' | |
13 -c '$col_color' | |
14 ]]> | |
15 </command> | |
16 <inputs> | |
17 <param name="infile" type="data" format="tabular" label="Select data file :"/> | |
18 <param name="col_dimensions" multiple="true" type="data_column" data_ref="infile" use_header_names="true" display="checkboxes" label="Select the columns for dimentions:"/> | |
19 <param name="col_color" type="data_column" data_ref="infile" use_header_names="true" label="Select a column containg the values for coloring:" help="e.g. mean_test_score"/> | |
20 </inputs> | |
21 | |
22 <outputs> | |
23 <data name="output" format="html" from_work_dir="output.html" label="Plot visualization of tabular data on ${on_string}"/> | |
24 </outputs> | |
25 <tests> | |
26 <test> | |
27 <param name="infile" value="parcoords01.tabular" ftype="tabular"/> | |
28 <param name="col_dimensions" value="4,5"/> | |
29 <param name="col_color" value="3"/> | |
30 <output name="output" file="parcoords_plot01.html" compare="sim_size"/> | |
31 </test> | |
32 <test> | |
33 <param name="infile" value="parcoords02.tabular" ftype="tabular"/> | |
34 <param name="col_dimensions" value="4,5"/> | |
35 <param name="col_color" value="3"/> | |
36 <output name="output" file="parcoords_plot02.html" compare="sim_size"/> | |
37 </test> | |
38 </tests> | |
39 <help><![CDATA[ | |
40 **What it does** | |
41 | |
42 | |
43 Produce a `parallel coordinates plot <https://plot.ly/python/parallel-coordinates-plot/>`_ from a tabular file. | |
44 Multiple columns are chosen for dimensions and a single column for coloring. The plot is buried in a html file which | |
45 provides rich interactive features. Image can be saved in various format, such as 'png', 'svg', 'jpeg' and so on. | |
46 | |
47 | |
48 ]]> | |
49 </help> | |
50 </tool> |