Mercurial > repos > bgruening > plotly_parallel_coordinates_plot
diff paracords_plot.xml @ 0:7b2455348edf draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/plotly_parallel_coordinates_plot commit 93fcfe0fa6a64246d13e0fb7e35a357985b02465
author | bgruening |
---|---|
date | Sun, 23 Sep 2018 07:52:27 -0400 |
parents | |
children | 7b21a9b5922f |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/paracords_plot.xml Sun Sep 23 07:52:27 2018 -0400 @@ -0,0 +1,50 @@ +<tool id="plotly_parallel_coordinates_plot" name="Parallel Coordinates Plot" version="0.1"> + <description>of tabular data</description> + <requirements> + <requirement type="package" version="3.6">python</requirement> + <requirement type="package" version="0.22.0">pandas</requirement> + <requirement type="package" version="3.1.1">plotly</requirement> + </requirements> + <version_command>echo $version</version_command> + <command detect_errors="aggressive"><![CDATA[ + python '$__tool_directory__/paracords_plot.py' + -i '$infile' + -d '$col_dimensions' + -c '$col_color' +]]> + </command> + <inputs> + <param name="infile" type="data" format="tabular" label="Select data file :"/> + <param name="col_dimensions" multiple="true" type="data_column" data_ref="infile" use_header_names="true" display="checkboxes" label="Select the columns for dimentions:"/> + <param name="col_color" type="data_column" data_ref="infile" use_header_names="true" label="Select a column containg the values for coloring:" help="e.g. mean_test_score"/> + </inputs> + + <outputs> + <data name="output" format="html" from_work_dir="output.html" label="Plot visualization of tabular data on ${on_string}"/> + </outputs> + <tests> + <test> + <param name="infile" value="parcoords01.tabular" ftype="tabular"/> + <param name="col_dimensions" value="4,5"/> + <param name="col_color" value="3"/> + <output name="output" file="parcoords_plot01.html" compare="sim_size"/> + </test> + <test> + <param name="infile" value="parcoords02.tabular" ftype="tabular"/> + <param name="col_dimensions" value="4,5"/> + <param name="col_color" value="3"/> + <output name="output" file="parcoords_plot02.html" compare="sim_size"/> + </test> + </tests> + <help><![CDATA[ +**What it does** + + +Produce a `parallel coordinates plot <https://plot.ly/python/parallel-coordinates-plot/>`_ from a tabular file. +Multiple columns are chosen for dimensions and a single column for coloring. The plot is buried in a html file which +provides rich interactive features. Image can be saved in various format, such as 'png', 'svg', 'jpeg' and so on. + + + ]]> + </help> +</tool>