Mercurial > repos > bgruening > repeat_masker

annotate test-data/fake_repbase.embl @ 7:d7540a923c7b draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 133126ca40437cebd8ead4ec14400dcc22b5ce21"
author iuc
date Sun, 01 Dec 2019 09:31:09 -0500
parents 04f5c3d7448e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
1 CC Fake repbase-like embl file, using data from DfamConsensus.embl*
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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2 CC ****************************************************************
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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3 XX
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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4 ID ACROBAT1 repeatmasker; DNA; ???; 768 BP.
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
5 CC consensus - See RepBase for additional annotations.
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
6 XX
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
7 SQ Sequence 768 BP; 178 A; 194 C; 215 G; 181 T; 0 other;
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
8 ggtgatgctg ccaacttact gatttagtgt atgatggtgt ttttgaggtg ctccagtggc 60
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
9 ttctgtttct atcagctgtc cctcctgttc agctactgac ggggtggtgc gtaacggcaa 120
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
10 aagcaccgcc ggacatcagc gctatctctg ctctcactgc cgtaaaacat ggcaactgca 180
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
11 gttcacttac accgcttctc aacccggtac gcaccagaaa atcattgata tggccatgaa 240
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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12 tggcgttgga tgccgggcaa cagcccgcat tatgggcgtt ggcctcaaca cgattttacg 300
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
13 tcacttaaaa aactcaggcc gcagtcggta acctcgcgca tacagccggg cagtgacgtc 360
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
14 atcgtctgcg cggaaatgga cgaacagtgg ggctatgtcg gggctaaatc gcgccagcgc 420
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
15 tggctgtttt acgcgtatga cagtctccgg aagacggttg ttgcgcacgt attcggtgaa 480
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
16 cgcactatgg cgacgctggg gcgtcttatg agcctgctgt caccctttga cgtggtgata 540
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
17 tggatgacgg atggctggcc gctgtatgaa tcccgcctga agggaaagct gcacgtaatc 600
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
18 agcaagcgat atacgcagcg aattgagcgg cataacctga atctgaggca gcacctggca 660
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
19 cggctgggac ggaagtcgct gtcgttctca aaatcggtgg agctgcatga caaagtcatc 720
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
20 gggcattatc tgaacataaa acactatcaa taagttggag tcattacc 768
04f5c3d7448e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
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21 //