Mercurial > repos > bgruening > repeat_masker
comparison test-data/small_repbase.fasta.stats @ 4:04f5c3d7448e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
| author | iuc |
|---|---|
| date | Fri, 04 May 2018 07:59:50 -0400 |
| parents | |
| children | 438f65cb1d14 |
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| 3:bdfc22c1c3e3 | 4:04f5c3d7448e |
|---|---|
| 1 ================================================== | |
| 2 file name: rm_input.fasta | |
| 3 sequences: 1 | |
| 4 total length: 14220 bp (14220 bp excl N/X-runs) | |
| 5 GC level: 39.94 % | |
| 6 bases masked: 378 bp ( 2.66 %) | |
| 7 ================================================== | |
| 8 number of length percentage | |
| 9 elements* occupied of sequence | |
| 10 -------------------------------------------------- | |
| 11 Retroelements 0 0 bp 0.00 % | |
| 12 SINEs: 0 0 bp 0.00 % | |
| 13 Penelope 0 0 bp 0.00 % | |
| 14 LINEs: 0 0 bp 0.00 % | |
| 15 CRE/SLACS 0 0 bp 0.00 % | |
| 16 L2/CR1/Rex 0 0 bp 0.00 % | |
| 17 R1/LOA/Jockey 0 0 bp 0.00 % | |
| 18 R2/R4/NeSL 0 0 bp 0.00 % | |
| 19 RTE/Bov-B 0 0 bp 0.00 % | |
| 20 L1/CIN4 0 0 bp 0.00 % | |
| 21 LTR elements: 0 0 bp 0.00 % | |
| 22 BEL/Pao 0 0 bp 0.00 % | |
| 23 Ty1/Copia 0 0 bp 0.00 % | |
| 24 Gypsy/DIRS1 0 0 bp 0.00 % | |
| 25 Retroviral 0 0 bp 0.00 % | |
| 26 | |
| 27 DNA transposons 0 0 bp 0.00 % | |
| 28 hobo-Activator 0 0 bp 0.00 % | |
| 29 Tc1-IS630-Pogo 0 0 bp 0.00 % | |
| 30 En-Spm 0 0 bp 0.00 % | |
| 31 MuDR-IS905 0 0 bp 0.00 % | |
| 32 PiggyBac 0 0 bp 0.00 % | |
| 33 Tourist/Harbinger 0 0 bp 0.00 % | |
| 34 Other (Mirage, 0 0 bp 0.00 % | |
| 35 P-element, Transib) | |
| 36 | |
| 37 Rolling-circles 0 0 bp 0.00 % | |
| 38 | |
| 39 Unclassified: 0 0 bp 0.00 % | |
| 40 | |
| 41 Total interspersed repeats: 0 bp 0.00 % | |
| 42 | |
| 43 | |
| 44 Small RNA: 0 0 bp 0.00 % | |
| 45 | |
| 46 Satellites: 0 0 bp 0.00 % | |
| 47 Simple repeats: 7 378 bp 2.66 % | |
| 48 Low complexity: 0 0 bp 0.00 % | |
| 49 ================================================== | |
| 50 | |
| 51 * most repeats fragmented by insertions or deletions | |
| 52 have been counted as one element | |
| 53 Runs of >=20 X/Ns in query were excluded in % calcs | |
| 54 | |
| 55 | |
| 56 The query species was assumed to be anopheles genus | |
| 57 RepeatMasker Combined Database: Dfam_Consensus-20170127 | |
| 58 | |
| 59 run with rmblastn version 2.2.27+ | |
| 60 |