Mercurial > repos > bgruening > repeat_masker

comparison test-data/small.fasta.stats @ 9:438f65cb1d14 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 7f117678cfee55bb18706fd1bf14c0a380261eab"
author iuc
date Tue, 18 Aug 2020 05:39:55 -0400
parents 04f5c3d7448e
children bfc70c8cc5ca
comparison
equal deleted inserted replaced
8:ade773848c3d 9:438f65cb1d14
1 ================================================== 1 ==================================================
2 file name: dataset_12.dat 2 file name: rm_input.fasta
3 sequences: 1 3 sequences: 1
4 total length: 14220 bp (14220 bp excl N/X-runs) 4 total length: 14220 bp (14220 bp excl N/X-runs)
5 GC level: 39.94 % 5 GC level: 39.94 %
6 bases masked: 378 bp ( 2.66 %) 6 bases masked: 378 bp ( 2.66 %)
7 ================================================== 7 ==================================================
43 have been counted as one element 43 have been counted as one element
44 Runs of >=20 X/Ns in query were excluded in % calcs 44 Runs of >=20 X/Ns in query were excluded in % calcs
45 45
46 46
47 The query species was assumed to be homo 47 The query species was assumed to be homo
48 RepeatMasker Combined Database: Dfam_Consensus-20170127 48 RepeatMasker Combined Database: Dfam-Dfam_3.0
49 49
50 run with rmblastn version 2.2.27+ 50 run with rmblastn version 2.9.0+
51 The query was compared to unclassified sequences in ".../dataset_2.dat" 51 The query was compared to unclassified sequences in ".../dataset_257a7a8f-7065-486a-ae21-53e1fceff0f8.dat"
52 52