Mercurial > repos > bgruening > repeat_masker
view test-data/small.fasta.stats @ 4:04f5c3d7448e draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
| author | iuc |
|---|---|
| date | Fri, 04 May 2018 07:59:50 -0400 |
| parents | bdfc22c1c3e3 |
| children | 438f65cb1d14 |
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================================================== file name: dataset_12.dat sequences: 1 total length: 14220 bp (14220 bp excl N/X-runs) GC level: 39.94 % bases masked: 378 bp ( 2.66 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 0 0 bp 0.00 % ALUs 0 0 bp 0.00 % MIRs 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % LINE1 0 0 bp 0.00 % LINE2 0 0 bp 0.00 % L3/CR1 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % ERVL 0 0 bp 0.00 % ERVL-MaLRs 0 0 bp 0.00 % ERV_classI 0 0 bp 0.00 % ERV_classII 0 0 bp 0.00 % DNA elements: 0 0 bp 0.00 % hAT-Charlie 0 0 bp 0.00 % TcMar-Tigger 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 0 bp 0.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 8 378 bp 2.66 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be homo RepeatMasker Combined Database: Dfam_Consensus-20170127 run with rmblastn version 2.2.27+ The query was compared to unclassified sequences in ".../dataset_2.dat"