Mercurial > repos > bgruening > repeat_masker
view test-data/small.fasta.stats @ 3:bdfc22c1c3e3 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
| author | iuc |
|---|---|
| date | Wed, 02 May 2018 20:18:11 -0400 |
| parents | |
| children | 04f5c3d7448e |
line wrap: on
line source
================================================== file name: dataset_12.dat sequences: 1 total length: 14220 bp (14220 bp excl N/X-runs) GC level: 39.94 % bases masked: 378 bp ( 2.66 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 0 0 bp 0.00 % ALUs 0 0 bp 0.00 % MIRs 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % LINE1 0 0 bp 0.00 % LINE2 0 0 bp 0.00 % L3/CR1 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % ERVL 0 0 bp 0.00 % ERVL-MaLRs 0 0 bp 0.00 % ERV_classI 0 0 bp 0.00 % ERV_classII 0 0 bp 0.00 % DNA elements: 0 0 bp 0.00 % hAT-Charlie 0 0 bp 0.00 % TcMar-Tigger 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 0 bp 0.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 8 378 bp 2.66 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker Combined Database: Dfam_Consensus-20170127 run with rmblastn version 2.2.27+ The query was compared to unclassified sequences in ".../dataset_2.dat"