Mercurial > repos > bgruening > repeat_masker
comparison RepeatMasker.xml @ 2:5673e72241aa draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 17 Sep 2013 03:23:49 -0400 |
| parents | 880265000696 |
| children |
comparison
equal
deleted
inserted
replaced
| 1:880265000696 | 2:5673e72241aa |
|---|---|
| 1 <tool id="repeatmasker_wrapper" name="RepeatMasker" version="0.1.2"> | 1 <tool id="repeatmasker_wrapper" name="RepeatMasker" version="0.1.2"> |
| 2 <description>Masks different kind of repeats</description> | 2 <description>Masks different kind of repeats</description> |
| 3 <requirements> | |
| 4 <requirement type="binary">RepeatMasker</requirement> | |
| 5 </requirements> | |
| 3 <command> | 6 <command> |
| 4 ## The command is a Cheetah template which allows some Python based syntax. | 7 ## The command is a Cheetah template which allows some Python based syntax. |
| 5 ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces | 8 ## Lines starting hash hash are comments. Galaxy will turn newlines into spaces |
| 6 | 9 |
| 7 ## create temp directory | 10 ## create temp directory |
| 152 <option value="-species mouse">mouse</option> | 155 <option value="-species mouse">mouse</option> |
| 153 <option value="-species pig">pig</option> | 156 <option value="-species pig">pig</option> |
| 154 <option value="-species rat">rat</option> | 157 <option value="-species rat">rat</option> |
| 155 <option value="-species rice">rice</option> | 158 <option value="-species rice">rice</option> |
| 156 <option value="-species rodentia">rodentia</option> | 159 <option value="-species rodentia">rodentia</option> |
| 160 <option value="-species ruminantia">ruminantia</option> | |
| 157 <option value="-species wheat">wheat</option> | 161 <option value="-species wheat">wheat</option> |
| 158 </param> | 162 </param> |
| 159 | 163 |
| 160 <conditional name="adv_opts"> | 164 <conditional name="adv_opts"> |
| 161 <param name="adv_opts_selector" type="select" label="Advanced Options"> | 165 <param name="adv_opts_selector" type="select" label="Advanced Options"> |
| 209 <filter> | 213 <filter> |
| 210 (adv_opts['adv_opts_selector'] == 'advanced' and 'gff' in adv_opts['output_files']) | 214 (adv_opts['adv_opts_selector'] == 'advanced' and 'gff' in adv_opts['output_files']) |
| 211 </filter> | 215 </filter> |
| 212 </data> | 216 </data> |
| 213 </outputs> | 217 </outputs> |
| 214 <requirements> | |
| 215 <requirement type="binary">RepeatMasker</requirement> | |
| 216 </requirements> | |
| 217 <help> | 218 <help> |
| 218 | 219 |
| 219 .. class:: warningmark | 220 .. class:: warningmark |
| 220 | 221 |
| 221 **What it does** | 222 **What it does** |