Mercurial > repos > bgruening > repeat_masker

comparison test-data/small.fasta.stats @ 10:bfc70c8cc5ca draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
author iuc
date Fri, 11 Dec 2020 22:26:02 +0000
parents 438f65cb1d14
children 72aade318318
comparison
equal deleted inserted replaced
9:438f65cb1d14 10:bfc70c8cc5ca
6 bases masked: 378 bp ( 2.66 %) 6 bases masked: 378 bp ( 2.66 %)
7 ================================================== 7 ==================================================
8 number of length percentage 8 number of length percentage
9 elements* occupied of sequence 9 elements* occupied of sequence
10 -------------------------------------------------- 10 --------------------------------------------------
11 SINEs: 0 0 bp 0.00 % 11 Retroelements 0 0 bp 0.00 %
12 ALUs 0 0 bp 0.00 % 12 SINEs: 0 0 bp 0.00 %
13 MIRs 0 0 bp 0.00 % 13 Penelope 0 0 bp 0.00 %
14 LINEs: 0 0 bp 0.00 %
15 CRE/SLACS 0 0 bp 0.00 %
16 L2/CR1/Rex 0 0 bp 0.00 %
17 R1/LOA/Jockey 0 0 bp 0.00 %
18 R2/R4/NeSL 0 0 bp 0.00 %
19 RTE/Bov-B 0 0 bp 0.00 %
20 L1/CIN4 0 0 bp 0.00 %
21 LTR elements: 0 0 bp 0.00 %
22 BEL/Pao 0 0 bp 0.00 %
23 Ty1/Copia 0 0 bp 0.00 %
24 Gypsy/DIRS1 0 0 bp 0.00 %
25 Retroviral 0 0 bp 0.00 %
14 26
15 LINEs: 0 0 bp 0.00 % 27 DNA transposons 0 0 bp 0.00 %
16 LINE1 0 0 bp 0.00 % 28 hobo-Activator 0 0 bp 0.00 %
17 LINE2 0 0 bp 0.00 % 29 Tc1-IS630-Pogo 0 0 bp 0.00 %
18 L3/CR1 0 0 bp 0.00 % 30 En-Spm 0 0 bp 0.00 %
31 MuDR-IS905 0 0 bp 0.00 %
32 PiggyBac 0 0 bp 0.00 %
33 Tourist/Harbinger 0 0 bp 0.00 %
34 Other (Mirage, 0 0 bp 0.00 %
35 P-element, Transib)
19 36
20 LTR elements: 0 0 bp 0.00 % 37 Rolling-circles 0 0 bp 0.00 %
21 ERVL 0 0 bp 0.00 %
22 ERVL-MaLRs 0 0 bp 0.00 %
23 ERV_classI 0 0 bp 0.00 %
24 ERV_classII 0 0 bp 0.00 %
25 38
26 DNA elements: 0 0 bp 0.00 % 39 Unclassified: 0 0 bp 0.00 %
27 hAT-Charlie 0 0 bp 0.00 %
28 TcMar-Tigger 0 0 bp 0.00 %
29 40
30 Unclassified: 0 0 bp 0.00 % 41 Total interspersed repeats: 0 bp 0.00 %
31
32 Total interspersed repeats: 0 bp 0.00 %
33 42
34 43
35 Small RNA: 0 0 bp 0.00 % 44 Small RNA: 0 0 bp 0.00 %
36 45
37 Satellites: 0 0 bp 0.00 % 46 Satellites: 0 0 bp 0.00 %
38 Simple repeats: 8 378 bp 2.66 % 47 Simple repeats: 8 378 bp 2.66 %
39 Low complexity: 0 0 bp 0.00 % 48 Low complexity: 0 0 bp 0.00 %
40 ================================================== 49 ==================================================
41 50
42 * most repeats fragmented by insertions or deletions 51 * most repeats fragmented by insertions or deletions
43 have been counted as one element 52 have been counted as one element
44 Runs of >=20 X/Ns in query were excluded in % calcs 53 Runs of >=20 X/Ns in query were excluded in % calcs
45 54
46 55
47 The query species was assumed to be homo 56 RepeatMasker version 4.1.1 , default mode
48 RepeatMasker Combined Database: Dfam-Dfam_3.0 57
49 58 run with rmblastn version 2.10.0+
50 run with rmblastn version 2.9.0+ 59 The query was compared to unclassified sequences in ".../dataset_a9c6a294-8dbb-4a71-ad9c-e36735923fbf.dat"
51 The query was compared to unclassified sequences in ".../dataset_257a7a8f-7065-486a-ae21-53e1fceff0f8.dat"
52 60