view test-data/small.fasta.stats @ 4:04f5c3d7448e draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
author iuc
date Fri, 04 May 2018 07:59:50 -0400
parents bdfc22c1c3e3
children 438f65cb1d14
line wrap: on
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==================================================
file name: dataset_12.dat           
sequences:             1
total length:      14220 bp  (14220 bp excl N/X-runs) 
GC level:         39.94 %
bases masked:        378 bp ( 2.66 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp    0.00 %
      ALUs            0            0 bp    0.00 %
      MIRs            0            0 bp    0.00 %

LINEs:                0            0 bp    0.00 %
      LINE1           0            0 bp    0.00 %
      LINE2           0            0 bp    0.00 %
      L3/CR1          0            0 bp    0.00 %

LTR elements:         0            0 bp    0.00 %
      ERVL            0            0 bp    0.00 %
      ERVL-MaLRs      0            0 bp    0.00 %
      ERV_classI      0            0 bp    0.00 %
      ERV_classII     0            0 bp    0.00 %

DNA elements:         0            0 bp    0.00 %
     hAT-Charlie      0            0 bp    0.00 %
     TcMar-Tigger     0            0 bp    0.00 %

Unclassified:         0            0 bp    0.00 %

Total interspersed repeats:        0 bp    0.00 %


Small RNA:            0            0 bp    0.00 %

Satellites:           0            0 bp    0.00 %
Simple repeats:       8          378 bp    2.66 %
Low complexity:       0            0 bp    0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element
  Runs of >=20 X/Ns in query were excluded in % calcs


The query species was assumed to be homo          
RepeatMasker Combined Database: Dfam_Consensus-20170127
                          
run with rmblastn version 2.2.27+
The query was compared to unclassified sequences in ".../dataset_2.dat"