Mercurial > repos > bgruening > repeat_masker
view test-data/small.fasta.stats @ 14:7563ea7a922d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
| author | iuc |
|---|---|
| date | Mon, 24 Apr 2023 10:29:31 +0000 |
| parents | 72aade318318 |
| children |
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================================================== file name: rm_input.fasta sequences: 1 total length: 14220 bp (14220 bp excl N/X-runs) GC level: 39.94 % bases masked: 378 bp ( 2.66 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 0 0 bp 0.00 % SINEs: 0 0 bp 0.00 % Penelope: 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 0 0 bp 0.00 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 0 0 bp 0.00 % L1/CIN4 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % BEL/Pao 0 0 bp 0.00 % Ty1/Copia 0 0 bp 0.00 % Gypsy/DIRS1 0 0 bp 0.00 % Retroviral 0 0 bp 0.00 % DNA transposons 0 0 bp 0.00 % hobo-Activator 0 0 bp 0.00 % Tc1-IS630-Pogo 0 0 bp 0.00 % En-Spm 0 0 bp 0.00 % MULE-MuDR 0 0 bp 0.00 % PiggyBac 0 0 bp 0.00 % Tourist/Harbinger 0 0 bp 0.00 % Other (Mirage, 0 0 bp 0.00 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 0 bp 0.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 8 378 bp 2.66 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs RepeatMasker version 4.1.5 , default mode run with rmblastn version 2.13.0+ The query was compared to unclassified sequences in ".../dataset_9e3ddbd2-0776-4c6d-bed6-0f4cd415796c.dat" FamDB: