Mercurial > repos > bgruening > repeat_masker
view test-data/small_dfam_up.fasta.stats @ 14:7563ea7a922d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
| author | iuc |
|---|---|
| date | Mon, 24 Apr 2023 10:29:31 +0000 |
| parents | 72aade318318 |
| children |
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================================================== file name: rm_input.fasta sequences: 1 total length: 14220 bp (14220 bp excl N/X-runs) GC level: 39.94 % bases masked: 378 bp ( 2.66 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- SINEs: 0 0 bp 0.00 % Alu/B1 0 0 bp 0.00 % B2-B4 0 0 bp 0.00 % IDs 0 0 bp 0.00 % MIRs 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % LINE1 0 0 bp 0.00 % LINE2 0 0 bp 0.00 % L3/CR1 0 0 bp 0.00 % LTR elements: 0 0 bp 0.00 % ERVL 0 0 bp 0.00 % ERVL-MaLRs 0 0 bp 0.00 % ERV_classI 0 0 bp 0.00 % ERV_classII 0 0 bp 0.00 % DNA elements: 0 0bp 0.00 % hAT-Charlie 0 0 bp 0.00 % TcMar-Tigger 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 0 bp 0.00 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 7 378 bp 2.66 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element Runs of >=20 X/Ns in query were excluded in % calcs The query species was assumed to be rodent RepeatMasker version 4.1.5 , default mode run with rmblastn version 2.13.0+ FamDB: CONS-Dfam_1.0