Mercurial > repos > bgruening > rnaz
diff rnaz.xml @ 2:580ee1e91801 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rnaz commit e85474d72b07c70ca061f51b7165951038a06a6c
| author | bgruening |
|---|---|
| date | Thu, 28 Sep 2017 11:21:09 -0400 |
| parents | e23c455f8335 |
| children | 58fd61a8362e |
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--- a/rnaz.xml Wed Mar 01 17:15:13 2017 -0500 +++ b/rnaz.xml Thu Sep 28 11:21:09 2017 -0400 @@ -1,4 +1,4 @@ -<tool id="rnaz" name="RNAz" version="2.1.0"> +<tool id="rnaz" name="RNAz" version="2.1.1"> <description>predicting structurally conserved and thermodynamically stable RNA secondary structures</description> <requirements> @@ -15,8 +15,7 @@ <![CDATA[ RNAz '$input' --$forward_or_reverse - $dinucleotide - $mononucleotide + $zscore $locarnate $noshuffle #if $cutoff != -1.0: @@ -34,9 +33,11 @@ <option value="reverse">Score reverse strand (-r)</option> <option value="both-strands">Score both strands (-b)</option> </param> + <param name="zscore" type="select" label="Which type of z-scores"> + <option value="--mononucleotide">Use mononucleotide shuffled z-scores</option> + <option value="--dinucleotide" selected="true">Use dinucleotide shuffled z-scores</option> + </param> <param argument="--cutoff" label="Probability cutoff" type="float" value="-1.0" help="-1.0 to deactivate"/> - <param argument="--dinucleotide" type="boolean" checked="true" truevalue="--dinucleotide" falsevalue="" label="Use dinucleotide shuffled z-scores" /> - <param argument="--mononucleotide" type="boolean" checked="true" truevalue="--mononucleotide" falsevalue="" label="Use mononucleotide shuffled z-scores" /> <param argument="--locarnate" type="boolean" checked="false" truevalue="--locarnate" falsevalue="" label="Use decision model for structural alignments" /> <param argument="--no-shuffle" name="noshuffle" type="boolean" checked="false" truevalue="--no-shuffle" falsevalue="" label="Never fall back to shuffling" /> </inputs>