Mercurial > repos > bgruening > sailfish

comparison test-data/sailfish_bias_result1.tab @ 5:1b4ed566a41c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sailfish commit 03edb751808fef8bce744ebcbad5661a32373211
author bgruening
date Wed, 02 Nov 2016 10:30:36 -0400
parents 3b4ed0e473dc
children
comparison
equal deleted inserted replaced
4:03c74355227f 5:1b4ed566a41c
1 # sailfish (quasi-mapping-based) v0.7.6 1 Name Length EffectiveLength TPM NumReads
2 # [ program ] => sailfish 2 NM_001168316 2283 1528.95 12702.4 158.926
3 # [ command ] => quant 3 NM_174914 2385 1599.63 114719 1501.66
4 # [ index ] => { ./index_dir } 4 NR_031764 1853 1214.33 10407.1 103.415
5 # [ mates1 ] => { ./mate1.fastq } 5 NM_004503 1681 1085.83 37300.1 331.428
6 # [ mates2 ] => { ./mate2.fastq } 6 NM_006897 1541 984.724 82401.9 664
7 # [ libType ] => { IU } 7 NM_014212 2037 1316.12 5106.81 55
8 # [ output ] => { ./ } 8 NM_014620 2300 1541.27 46908.6 591.628
9 # [ biasCorrect ] => { } 9 NM_017409 1959 1273.24 4510.99 47
10 # [ threads ] => { 1 } 10 NM_017410 2396 1562.29 3285.28 42
11 # [ fldMean ] => { 200 } 11 NM_018953 1612 1019.15 27338 227.994
12 # [ fldSD ] => { 80 } 12 NM_022658 2288 1634.87 364846 4881
13 # [ maxReadOcc ] => { 200 } 13 NM_153633 1666 1082.85 40694.7 360.597
14 # [ maxFragLen ] => { 1000 } 14 NM_153693 2072 1374.67 6520.1 73.3448
15 # [ txpAggregationKey ] => { gene_id } 15 NM_173860 849 483.271 243258 962
16 # [ mapping rate ] => { 100% } 16 NR_003084 1640 1052.77 1.09566 0.00943897
17 # Name Length TPM NumReads
18 NM_022658 2288 378838 4881
19 NM_174914 2385 111257 1500.04
20 NM_017410 2396 3099.5 42
21 NM_018953 1612 26168.3 228
22 NM_001168316 2283 12398.5 159.361
23 NM_004503 1681 36198.8 330.806
24 NR_003084 1640 0 0
25 NM_173860 849 240218 962
26 NM_006897 1541 80244.3 664
27 NM_153693 2072 6430.57 74.2815
28 NR_031764 1853 10254.5 104.595
29 NM_014620 2300 45132.7 584.838
30 NM_153633 1666 40578.4 367.074
31 NM_014212 2037 4852.08 55
32 NM_017409 1959 4330.19 47