Mercurial > repos > bgruening > sailfish

diff test-data/sailfish_bias_result1.tab @ 5:1b4ed566a41c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sailfish commit 03edb751808fef8bce744ebcbad5661a32373211
author bgruening
date Wed, 02 Nov 2016 10:30:36 -0400
parents 3b4ed0e473dc
children
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--- a/test-data/sailfish_bias_result1.tab	Sun Sep 18 06:05:57 2016 -0400
+++ b/test-data/sailfish_bias_result1.tab	Wed Nov 02 10:30:36 2016 -0400
@@ -1,32 +1,16 @@
-# sailfish (quasi-mapping-based) v0.7.6
-# [ program ] => sailfish 
-# [ command ] => quant 
-# [ index ] => { ./index_dir }
-# [ mates1 ] => { ./mate1.fastq }
-# [ mates2 ] => { ./mate2.fastq }
-# [ libType ] => { IU }
-# [ output ] => { ./ }
-# [ biasCorrect ] => { }
-# [ threads ] => { 1 }
-# [ fldMean ] => { 200 }
-# [ fldSD ] => { 80 }
-# [ maxReadOcc ] => { 200 }
-# [ maxFragLen ] => { 1000 }
-# [ txpAggregationKey ] => { gene_id }
-# [ mapping rate ] => { 100% }
-# Name	Length	TPM	NumReads
-NM_022658	2288	378838	4881
-NM_174914	2385	111257	1500.04
-NM_017410	2396	3099.5	42
-NM_018953	1612	26168.3	228
-NM_001168316	2283	12398.5	159.361
-NM_004503	1681	36198.8	330.806
-NR_003084	1640	0	0
-NM_173860	849	240218	962
-NM_006897	1541	80244.3	664
-NM_153693	2072	6430.57	74.2815
-NR_031764	1853	10254.5	104.595
-NM_014620	2300	45132.7	584.838
-NM_153633	1666	40578.4	367.074
-NM_014212	2037	4852.08	55
-NM_017409	1959	4330.19	47
+Name	Length	EffectiveLength	TPM	NumReads
+NM_001168316	2283	1528.95	12702.4	158.926
+NM_174914	2385	1599.63	114719	1501.66
+NR_031764	1853	1214.33	10407.1	103.415
+NM_004503	1681	1085.83	37300.1	331.428
+NM_006897	1541	984.724	82401.9	664
+NM_014212	2037	1316.12	5106.81	55
+NM_014620	2300	1541.27	46908.6	591.628
+NM_017409	1959	1273.24	4510.99	47
+NM_017410	2396	1562.29	3285.28	42
+NM_018953	1612	1019.15	27338	227.994
+NM_022658	2288	1634.87	364846	4881
+NM_153633	1666	1082.85	40694.7	360.597
+NM_153693	2072	1374.67	6520.1	73.3448
+NM_173860	849	483.271	243258	962
+NR_003084	1640	1052.77	1.09566	0.00943897