Mercurial > repos > bgruening > sklearn_feature_selection

comparison feature_selection.xml @ 13:f8dfdb47508b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
author bgruening
date Fri, 17 Aug 2018 12:28:35 -0400
parents 96f9b73327f2
children dc411a215138
comparison
equal deleted inserted replaced
12:bc434eb66fdc 13:f8dfdb47508b
14 <configfiles> 14 <configfiles>
15 <inputs name="inputs" /> 15 <inputs name="inputs" />
16 <configfile name="feature_selection_script"> 16 <configfile name="feature_selection_script">
17 <![CDATA[ 17 <![CDATA[
18 import sys 18 import sys
19 import os
19 import json 20 import json
20 import pandas 21 import pandas
21 import pickle
22 import ast
23 import numpy as np
24 import xgboost
25 import sklearn.feature_selection 22 import sklearn.feature_selection
26 from sklearn import svm, linear_model, ensemble, naive_bayes, tree, neighbors 23
27 24 execfile("$__tool_directory__/utils.py")
28 @COLUMNS_FUNCTION@ 25
29 @GET_ESTIMATOR_FUNCTION@ 26 safe_eval = SafeEval()
30 @FEATURE_SELECTOR_FUNCTION@
31 27
32 input_json_path = sys.argv[1] 28 input_json_path = sys.argv[1]
33 with open(input_json_path, "r") as param_handler: 29 with open(input_json_path, "r") as param_handler:
34 params = json.load(param_handler) 30 params = json.load(param_handler)
35 31
115 <test> 111 <test>
116 <param name="selected_algorithm" value="SelectFromModel"/> 112 <param name="selected_algorithm" value="SelectFromModel"/>
117 <param name="input_mode" value="new"/> 113 <param name="input_mode" value="new"/>
118 <param name="selected_module" value="ensemble"/> 114 <param name="selected_module" value="ensemble"/>
119 <param name="selected_estimator" value="RandomForestRegressor"/> 115 <param name="selected_estimator" value="RandomForestRegressor"/>
120 <param name="text_params" value="'n_estimators': 10, 'random_state': 10"/> 116 <param name="text_params" value="n_estimators=10, random_state=10"/>
121 <param name="infile1" value="regression_train.tabular" ftype="tabular"/> 117 <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
122 <param name="header1" value="false"/> 118 <param name="header1" value="false"/>
123 <param name="col1" value="1,2,3,4,5"/> 119 <param name="col1" value="1,2,3,4,5"/>
124 <param name="infile2" value="regression_train.tabular" ftype="tabular"/> 120 <param name="infile2" value="regression_train.tabular" ftype="tabular"/>
125 <param name="col2" value="6"/> 121 <param name="col2" value="6"/>
193 <test> 189 <test>
194 <param name="selected_algorithm" value="RFE"/> 190 <param name="selected_algorithm" value="RFE"/>
195 <param name="input_mode" value="new"/> 191 <param name="input_mode" value="new"/>
196 <param name="selected_module" value="ensemble"/> 192 <param name="selected_module" value="ensemble"/>
197 <param name="selected_estimator" value="RandomForestRegressor"/> 193 <param name="selected_estimator" value="RandomForestRegressor"/>
198 <param name="text_params" value="'n_estimators': 10, 'random_state':10"/> 194 <param name="text_params" value="n_estimators=10, random_state=10"/>
199 <param name="infile1" value="regression_train.tabular" ftype="tabular"/> 195 <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
200 <param name="header1" value="false"/> 196 <param name="header1" value="false"/>
201 <param name="col1" value="1,2,3,4,5"/> 197 <param name="col1" value="1,2,3,4,5"/>
202 <param name="infile2" value="regression_train.tabular" ftype="tabular"/> 198 <param name="infile2" value="regression_train.tabular" ftype="tabular"/>
203 <param name="col2" value="6"/> 199 <param name="col2" value="6"/>
207 <test> 203 <test>
208 <param name="selected_algorithm" value="RFECV"/> 204 <param name="selected_algorithm" value="RFECV"/>
209 <param name="input_mode" value="new"/> 205 <param name="input_mode" value="new"/>
210 <param name="selected_module" value="ensemble"/> 206 <param name="selected_module" value="ensemble"/>
211 <param name="selected_estimator" value="RandomForestRegressor"/> 207 <param name="selected_estimator" value="RandomForestRegressor"/>
212 <param name="text_params" value="'n_estimators': 10, 'random_state':10"/> 208 <param name="text_params" value="n_estimators=10, random_state=10"/>
213 <param name="infile1" value="regression_train.tabular" ftype="tabular"/> 209 <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
214 <param name="header1" value="false"/> 210 <param name="header1" value="false"/>
215 <param name="col1" value="1,2,3,4,5"/> 211 <param name="col1" value="1,2,3,4,5"/>
216 <param name="infile2" value="regression_train.tabular" ftype="tabular"/> 212 <param name="infile2" value="regression_train.tabular" ftype="tabular"/>
217 <param name="col2" value="6"/> 213 <param name="col2" value="6"/>