Mercurial > repos > bgruening > sklearn_feature_selection

diff feature_selection.xml @ 13:f8dfdb47508b draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
author bgruening
date Fri, 17 Aug 2018 12:28:35 -0400
parents 96f9b73327f2
children dc411a215138
line wrap: on
line diff
--- a/feature_selection.xml	Tue Aug 07 05:47:17 2018 -0400
+++ b/feature_selection.xml	Fri Aug 17 12:28:35 2018 -0400
@@ -16,18 +16,14 @@
         <configfile name="feature_selection_script">
             <![CDATA[
 import sys
+import os
 import json
 import pandas
-import pickle
-import ast
-import numpy as np
-import xgboost
 import sklearn.feature_selection
-from sklearn import svm, linear_model, ensemble, naive_bayes, tree, neighbors
 
-@COLUMNS_FUNCTION@
-@GET_ESTIMATOR_FUNCTION@
-@FEATURE_SELECTOR_FUNCTION@
+execfile("$__tool_directory__/utils.py")
+
+safe_eval = SafeEval()
 
 input_json_path = sys.argv[1]
 with open(input_json_path, "r") as param_handler:
@@ -117,7 +113,7 @@
             <param name="input_mode" value="new"/>
             <param name="selected_module" value="ensemble"/>
             <param name="selected_estimator" value="RandomForestRegressor"/>
-            <param name="text_params" value="'n_estimators': 10, 'random_state': 10"/>
+            <param name="text_params" value="n_estimators=10, random_state=10"/>
             <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
             <param name="header1" value="false"/>
             <param name="col1" value="1,2,3,4,5"/>
@@ -195,7 +191,7 @@
             <param name="input_mode" value="new"/>
             <param name="selected_module" value="ensemble"/>
             <param name="selected_estimator" value="RandomForestRegressor"/>
-            <param name="text_params" value="'n_estimators': 10, 'random_state':10"/>
+            <param name="text_params" value="n_estimators=10, random_state=10"/>
             <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
             <param name="header1" value="false"/>
             <param name="col1" value="1,2,3,4,5"/>
@@ -209,7 +205,7 @@
             <param name="input_mode" value="new"/>
             <param name="selected_module" value="ensemble"/>
             <param name="selected_estimator" value="RandomForestRegressor"/>
-            <param name="text_params" value="'n_estimators': 10, 'random_state':10"/>
+            <param name="text_params" value="n_estimators=10, random_state=10"/>
             <param name="infile1" value="regression_train.tabular" ftype="tabular"/>
             <param name="header1" value="false"/>
             <param name="col1" value="1,2,3,4,5"/>