sklearn_model_validation: main

annotate main_macros.xml @ 16:86e1e2874460 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d

author	bgruening
date	Sun, 30 Dec 2018 02:02:32 -0500
parents	e244d6f2df1a
children	cf9aa11b91c8

rev	line source
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1 <macros>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	2 <token name="@VERSION@">1.0</token>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	3
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	4 <xml name="python_requirements">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	5 <requirements>
14 e244d6f2df1a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1 bgruening parents: 13 diff changeset	6 <requirement type="package" version="3.6">python</requirement>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	7 <requirement type="package" version="0.20.2">scikit-learn</requirement>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	8 <requirement type="package" version="0.23.4">pandas</requirement>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	9 <requirement type="package" version="0.80">xgboost</requirement>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	10 <requirement type="package" version="0.9.13">asteval</requirement>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	11 <yield />
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	12 </requirements>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	13 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	14
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	15 <xml name="macro_stdio">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	16 <stdio>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	17 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	18 </stdio>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	19 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	20
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	21
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	22 <!--Generic interface-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	23
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	24 <xml name="sl_Conditional" token_train="tabular" token_data="tabular" token_model="txt">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	25 <conditional name="selected_tasks">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	26 <param name="selected_task" type="select" label="Select a Classification Task">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	27 <option value="train" selected="true">Train a model</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	28 <option value="load">Load a model and predict</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	29 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	30 <when value="load">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	31 <param name="infile_model" type="data" format="@MODEL@" label="Models" help="Select a model file."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	32 <param name="infile_data" type="data" format="@DATA@" label="Data (tabular)" help="Select the dataset you want to classify."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	33 <param name="header" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	34 <conditional name="prediction_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	35 <param name="prediction_option" type="select" label="Select the type of prediction">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	36 <option value="predict">Predict class labels</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	37 <option value="advanced">Include advanced options</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	38 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	39 <when value="predict">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	40 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	41 <when value="advanced">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	42 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	43 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	44 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	45 <when value="train">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	46 <conditional name="selected_algorithms">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	47 <yield />
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	48 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	49 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	50 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	51 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	52
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	53 <xml name="advanced_section">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	54 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	55 <yield />
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	56 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	57 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	58
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	59
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	60 <!--Generalized Linear Models-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	61 <xml name="loss" token_help=" " token_select="false">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	62 <param argument="loss" type="select" label="Loss function" help="@HELP@">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	63 <option value="squared_loss" selected="@SELECT@">squared loss</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	64 <option value="huber">huber</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	65 <option value="epsilon_insensitive">epsilon insensitive</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	66 <option value="squared_epsilon_insensitive">squared epsilon insensitive</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	67 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	68 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	69 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	70
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	71 <xml name="penalty" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	72 <param argument="penalty" type="select" label="Penalty (regularization term)" help="@HELP@">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	73 <option value="l2" selected="true">l2</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	74 <option value="l1">l1</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	75 <option value="elasticnet">elastic net</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	76 <option value="none">none</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	77 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	78 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	79 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	80
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	81 <xml name="l1_ratio" token_default_value="0.15" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	82 <param argument="l1_ratio" type="float" value="@DEFAULT_VALUE@" label="Elastic Net mixing parameter" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	83 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	84
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	85 <xml name="epsilon" token_default_value="0.1" token_help="Used if loss is ‘huber’, ‘epsilon_insensitive’, or ‘squared_epsilon_insensitive’. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	86 <param argument="epsilon" type="float" value="@DEFAULT_VALUE@" label="Epsilon (epsilon-sensitive loss functions only)" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	87 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	88
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	89 <xml name="learning_rate_s" token_help=" " token_selected1="false" token_selected2="false">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	90 <param argument="learning_rate" type="select" optional="true" label="Learning rate schedule" help="@HELP@">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	91 <option value="optimal" selected="@SELECTED1@">optimal</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	92 <option value="constant">constant</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	93 <option value="invscaling" selected="@SELECTED2@">inverse scaling</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	94 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	95 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	96 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	97
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	98 <xml name="eta0" token_default_value="0.0" token_help="Used with ‘constant’ or ‘invscaling’ schedules. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	99 <param argument="eta0" type="float" value="@DEFAULT_VALUE@" label="Initial learning rate" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	100 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	101
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	102 <xml name="power_t" token_default_value="0.5" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	103 <param argument="power_t" type="float" value="@DEFAULT_VALUE@" label="Exponent for inverse scaling learning rate" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	104 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	105
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	106 <xml name="normalize" token_checked="false" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	107 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Normalize samples before training" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	108 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	109
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	110 <xml name="copy_X" token_checked="true" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	111 <param argument="copy_X" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use a copy of samples" help="If false, samples would be overwritten. "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	112 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	113
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	114 <xml name="ridge_params">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	115 <expand macro="normalize"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	116 <expand macro="alpha" default_value="1.0"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	117 <expand macro="fit_intercept"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	118 <expand macro="max_iter" default_value=""/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	119 <expand macro="tol" default_value="0.001" help_text="Precision of the solution. "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	120 <!--class_weight-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	121 <expand macro="copy_X"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	122 <param argument="solver" type="select" value="" label="Solver to use in the computational routines" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	123 <option value="auto" selected="true">auto</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	124 <option value="svd">svd</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	125 <option value="cholesky">cholesky</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	126 <option value="lsqr">lsqr</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	127 <option value="sparse_cg">sparse_cg</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	128 <option value="sag">sag</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	129 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	130 <expand macro="random_state"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	131 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	132
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	133 <!--Ensemble methods-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	134 <xml name="n_estimators" token_default_value="10" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	135 <param argument="n_estimators" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of trees in the forest" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	136 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	137
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	138 <xml name="max_depth" token_default_value="" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	139 <param argument="max_depth" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum depth of the tree" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	140 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	141
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	142 <xml name="min_samples_split" token_type="integer" token_default_value="2" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	143 <param argument="min_samples_split" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="Minimum number of samples required to split an internal node" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	144 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	145
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	146 <xml name="min_samples_leaf" token_type="integer" token_default_value="1" token_label="Minimum number of samples in newly created leaves" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	147 <param argument="min_samples_leaf" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	148 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	149
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	150 <xml name="min_weight_fraction_leaf" token_default_value="0.0" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	151 <param argument="min_weight_fraction_leaf" type="float" optional="true" value="@DEFAULT_VALUE@" label="Minimum weighted fraction of the input samples required to be at a leaf node" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	152 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	153
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	154 <xml name="max_leaf_nodes" token_default_value="" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	155 <param argument="max_leaf_nodes" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum number of leaf nodes in best-first method" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	156 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	157
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	158 <xml name="min_impurity_decrease" token_default_value="0" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	159 <param argument="min_impurity_decrease" type="float" value="@DEFAULT_VALUE@" optional="true" label="The threshold value of impurity for stopping node splitting" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	160 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	161
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	162 <xml name="bootstrap" token_checked="true" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	163 <param argument="bootstrap" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="@CHECKED@" label="Use bootstrap samples for building trees." help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	164 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	165
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	166 <xml name="criterion" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	167 <param argument="criterion" type="select" label="Function to measure the quality of a split" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	168 <option value="gini" selected="true">Gini impurity</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	169 <option value="entropy">Information gain</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	170 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	171 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	172 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	173
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	174 <xml name="criterion2" token_help="">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	175 <param argument="criterion" type="select" label="Function to measure the quality of a split" >
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	176 <option value="mse">mse - mean squared error</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	177 <option value="mae">mae - mean absolute error</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	178 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	179 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	180 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	181
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	182 <xml name="oob_score" token_checked="false" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	183 <param argument="oob_score" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use out-of-bag samples to estimate the generalization error" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	184 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	185
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	186 <xml name="max_features">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	187 <conditional name="select_max_features">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	188 <param argument="max_features" type="select" label="max_features">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	189 <option value="auto" selected="true">auto - max_features=n_features</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	190 <option value="sqrt">sqrt - max_features=sqrt(n_features)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	191 <option value="log2">log2 - max_features=log2(n_features)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	192 <option value="number_input">I want to type the number in or input None type</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	193 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	194 <when value="auto">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	195 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	196 <when value="sqrt">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	197 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	198 <when value="log2">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	199 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	200 <when value="number_input">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	201 <param name="num_max_features" type="float" value="" optional="true" label="Input max_features number:" help="If int, consider the number of features at each split; If float, then max_features is a percentage and int(max_features * n_features) features are considered at each split."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	202 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	203 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	204 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	205
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	206 <xml name="verbose" token_default_value="0" token_help="If 1 then it prints progress and performance once in a while. If greater than 1 then it prints progress and performance for every tree.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	207 <param argument="verbose" type="integer" value="@DEFAULT_VALUE@" optional="true" label="Enable verbose output" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	208 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	209
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	210 <xml name="learning_rate" token_default_value="1.0" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	211 <param argument="learning_rate" type="float" optional="true" value="@DEFAULT_VALUE@" label="Learning rate" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	212 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	213
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	214 <xml name="subsample" token_help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	215 <param argument="subsample" type="float" value="1.0" optional="true" label="The fraction of samples to be used for fitting the individual base learners" help="@HELP@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	216 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	217
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	218 <xml name="presort">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	219 <param argument="presort" type="select" label="Whether to presort the data to speed up the finding of best splits in fitting" >
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	220 <option value="auto" selected="true">auto</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	221 <option value="true">true</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	222 <option value="false">false</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	223 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	224 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	225
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	226 <!--Parameters-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	227 <xml name="tol" token_default_value="0.0" token_help_text="Early stopping heuristics based on the relative center changes. Set to default (0.0) to disable this convergence detection.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	228 <param argument="tol" type="float" optional="true" value="@DEFAULT_VALUE@" label="Tolerance" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	229 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	230
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	231 <xml name="n_clusters" token_default_value="8">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	232 <param argument="n_clusters" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of clusters" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	233 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	234
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	235 <xml name="fit_intercept" token_checked="true">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	236 <param argument="fit_intercept" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Estimate the intercept" help="If false, the data is assumed to be already centered."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	237 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	238
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	239 <xml name="n_iter" token_default_value="5" token_help_text="The number of passes over the training data (aka epochs). ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	240 <param argument="n_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of iterations" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	241 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	242
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	243 <xml name="shuffle" token_checked="true" token_help_text=" " token_label="Shuffle data after each iteration">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	244 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	245 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	246
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	247 <xml name="random_state" token_default_value="" token_help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data. A fixed seed allows reproducible results. default=None.">
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	248 <param argument="random_state" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Random seed number" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	249 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	250
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	251 <xml name="warm_start" token_checked="true" token_help_text="When set to True, reuse the solution of the previous call to fit as initialization,otherwise, just erase the previous solution.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	252 <param argument="warm_start" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Perform warm start" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	253 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	254
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	255 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	256 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	257 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	258
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	259 <!--xml name="class_weight" token_default_value="" token_help_text="">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	260 <param argument="class_weight" type="" optional="true" value="@DEFAULT_VALUE@" label="" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	261 </xml-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	262
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	263 <xml name="alpha" token_default_value="0.0001" token_help_text="Constant that multiplies the regularization term if regularization is used. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	264 <param argument="alpha" type="float" optional="true" value="@DEFAULT_VALUE@" label="Regularization coefficient" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	265 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	266
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	267 <xml name="n_samples" token_default_value="100" token_help_text="The total number of points equally divided among clusters.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	268 <param argument="n_samples" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of samples" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	269 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	270
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	271 <xml name="n_features" token_default_value="2" token_help_text="Number of different numerical properties produced for each sample.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	272 <param argument="n_features" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of features" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	273 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	274
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	275 <xml name="noise" token_default_value="0.0" token_help_text="Floating point number. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	276 <param argument="noise" type="float" optional="true" value="@DEFAULT_VALUE@" label="Standard deviation of the Gaussian noise added to the data" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	277 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	278
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	279 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	280 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	281 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	282
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	283 <xml name="max_iter" token_default_value="300" token_label="Maximum number of iterations per single run" token_help_text=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	284 <param argument="max_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	285 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	286
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	287 <xml name="n_init" token_default_value="10" >
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	288 <param argument="n_init" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of runs with different centroid seeds" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	289 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	290
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	291 <xml name="init">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	292 <param argument="init" type="select" label="Centroid initialization method" help="''k-means++'' selects initial cluster centers that speed up convergence. ''random'' chooses k observations (rows) at random from data as initial centroids.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	293 <option value="k-means++">k-means++</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	294 <option value="random">random</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	295 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	296 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	297
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	298 <xml name="gamma" token_default_value="1.0" token_label="Scaling parameter" token_help_text=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	299 <param argument="gamma" type="float" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	300 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	301
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	302 <xml name="degree" token_default_value="3" token_label="Degree of the polynomial" token_help_text=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	303 <param argument="degree" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	304 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	305
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	306 <xml name="coef0" token_default_value="1" token_label="Zero coefficient" token_help_text=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	307 <param argument="coef0" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	308 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	309
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	310 <xml name="pos_label" token_default_value="">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	311 <param argument="pos_label" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Label of the positive class" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	312 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	313
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	314 <xml name="average">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	315 <param argument="average" type="select" optional="true" label="Averaging type" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	316 <option value="micro">Calculate metrics globally by counting the total true positives, false negatives and false positives. (micro)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	317 <option value="samples">Calculate metrics for each instance, and find their average. Only meaningful for multilabel. (samples)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	318 <option value="macro">Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. (macro)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	319 <option value="weighted">Calculate metrics for each label, and find their average, weighted by support (the number of true instances for each label). This alters ‘macro’ to account for label imbalance; it can result in an F-score that is not between precision and recall. (weighted)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	320 <option value="None">None</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	321 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	322 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	323 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	324
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	325 <xml name="beta">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	326 <param argument="beta" type="float" value="1.0" label="The strength of recall versus precision in the F-score" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	327 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	328
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	329
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	330 <!--Data interface-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	331
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	332 <xml name="samples_tabular" token_multiple1="false" token_multiple2="false">
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	333 <param name="infile1" type="data" format="tabular" label="Training samples dataset:"/>
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	334 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	335 <conditional name="column_selector_options_1">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	336 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	337 </conditional>
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	338 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:"/>
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	339 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	340 <conditional name="column_selector_options_2">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	341 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE2@" infile="infile2"/>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	342 </conditional>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	343 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	344 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	345
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	346 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	347 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	348 <option value="by_index_number" selected="true">Select columns by column index number(s)</option>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	349 <option value="all_but_by_index_number">All columns BUT by column index number(s)</option>
5 510aa2ce035e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 4 diff changeset	350 <option value="by_header_name">Select columns by column header name(s)</option>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	351 <option value="all_but_by_header_name">All columns BUT by column header name(s)</option>
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	352 <option value="all_columns">All columns</option>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	353 </param>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	354 <when value="by_index_number">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	355 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	356 </when>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	357 <when value="all_but_by_index_number">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	358 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	359 </when>
5 510aa2ce035e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 4 diff changeset	360 <when value="by_header_name">
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	361 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/>
5 510aa2ce035e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 4 diff changeset	362 </when>
510aa2ce035e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 4 diff changeset	363 <when value="all_but_by_header_name">
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	364 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/>
5 510aa2ce035e planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6 bgruening parents: 4 diff changeset	365 </when>
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	366 <when value="all_columns">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	367 </when>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	368 </xml>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	369
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	370 <xml name="clf_inputs_extended" token_label1=" " token_label2=" " token_multiple="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	371 <conditional name="true_columns">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	372 <param name="selected_input1" type="select" label="Select the input type of true labels dataset:">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	373 <option value="tabular" selected="true">Tabular</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	374 <option value="sparse">Sparse</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	375 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	376 <when value="tabular">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	377 <param name="infile1" type="data" label="@LABEL1@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	378 <param name="col1" type="data_column" data_ref="infile1" label="Select the target column:"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	379 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	380 <when value="sparse">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	381 <param name="infile1" type="data" format="txt" label="@LABEL1@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	382 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	383 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	384 <conditional name="predicted_columns">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	385 <param name="selected_input2" type="select" label="Select the input type of predicted labels dataset:">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	386 <option value="tabular" selected="true">Tabular</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	387 <option value="sparse">Sparse</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	388 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	389 <when value="tabular">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	390 <param name="infile2" type="data" label="@LABEL2@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	391 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	392 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	393 <when value="sparse">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	394 <param name="infile2" type="data" format="txt" label="@LABEL1@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	395 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	396 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	397 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	398
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	399 <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	400 <param name="infile1" type="data" format="tabular" label="@LABEL1@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	401 <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	402 <conditional name="column_selector_options_1">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	403 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	404 </conditional>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	405 <param name="infile2" type="data" format="tabular" label="@LABEL2@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	406 <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" />
3 424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	407 <conditional name="column_selector_options_2">
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	408 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE@" infile="infile2"/>
424d8d21744d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888 bgruening parents: 2 diff changeset	409 </conditional>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	410 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	411
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	412 <xml name="multiple_input" token_name="input_files" token_max_num="10" token_format="txt" token_label="Sparse matrix file (.mtx, .txt)" token_help_text="Specify a sparse matrix file in .txt format.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	413 <repeat name="@NAME@" min="1" max="@MAX_NUM@" title="Select input file(s):">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	414 <param name="input" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP_TEXT@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	415 </repeat>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	416 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	417
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	418 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2="">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	419 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	420 <param name="infile2" type="data" format="@FORMAT2@" label="@LABEL2@" help="@HELP2@"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	421 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	422 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	423
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	424 <xml name="sl_mixed_input">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	425 <conditional name="input_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	426 <param name="selected_input" type="select" label="Select input type:">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	427 <option value="tabular" selected="true">tabular data</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	428 <option value="sparse">sparse matrix</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	429 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	430 <when value="tabular">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	431 <expand macro="samples_tabular" multiple1="true"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	432 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	433 <when value="sparse">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	434 <expand macro="sparse_target"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	435 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	436 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	437 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	438
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	439 <!--Advanced options-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	440 <xml name="nn_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	441 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	442 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	443 <param argument="weights" type="select" label="Weight function" help="Used in prediction.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	444 <option value="uniform" selected="true">Uniform weights. All points in each neighborhood are weighted equally. (Uniform)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	445 <option value="distance">Weight points by the inverse of their distance. (Distance)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	446 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	447 <param argument="algorithm" type="select" label="Neighbor selection algorithm" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	448 <option value="auto" selected="true">Auto</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	449 <option value="ball_tree">BallTree</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	450 <option value="kd_tree">KDTree</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	451 <option value="brute">Brute-force</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	452 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	453 <param argument="leaf_size" type="integer" value="30" label="Leaf size" help="Used with BallTree and KDTree. Affects the time and memory usage of the constructed tree."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	454 <!--param name="metric"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	455 <!--param name="p"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	456 <!--param name="metric_params"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	457 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	458 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	459
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	460 <xml name="svc_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	461 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	462 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	463 <param argument="kernel" type="select" optional="true" label="Kernel type" help="Kernel type to be used in the algorithm. If none is given, ‘rbf’ will be used.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	464 <option value="rbf" selected="true">rbf</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	465 <option value="linear">linear</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	466 <option value="poly">poly</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	467 <option value="sigmoid">sigmoid</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	468 <option value="precomputed">precomputed</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	469 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	470 <param argument="degree" type="integer" optional="true" value="3" label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	471 <!--TODO: param argument="gamma" float, optional (default=’auto’) -->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	472 <param argument="coef0" type="float" optional="true" value="0.0" label="Zero coefficient (polynomial and sigmoid kernels only)"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	473 help="Independent term in kernel function. dafault: 0.0 "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	474 <param argument="shrinking" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	475 label="Use the shrinking heuristic" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	476 <param argument="probability" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	477 label="Enable probability estimates. " help="This must be enabled prior to calling fit, and will slow down that method."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	478 <!-- param argument="cache_size"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	479 <!--expand macro="class_weight"/-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	480 <expand macro="tol" default_value="0.001" help_text="Tolerance for stopping criterion. "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	481 <expand macro="max_iter" default_value="-1" label="Solver maximum number of iterations" help_text="Hard limit on iterations within solver, or -1 for no limit."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	482 <!--param argument="decision_function_shape"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	483 <expand macro="random_state" help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data for probability estimation. A fixed seed allows reproducible results."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	484 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	485 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	486
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	487 <xml name="spectral_clustering_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	488 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	489 <expand macro="n_clusters"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	490 <param argument="eigen_solver" type="select" value="" label="Eigen solver" help="The eigenvalue decomposition strategy to use.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	491 <option value="arpack" selected="true">arpack</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	492 <option value="lobpcg">lobpcg</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	493 <option value="amg">amg</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	494 <!--None-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	495 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	496 <expand macro="random_state"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	497 <expand macro="n_init"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	498 <param argument="gamma" type="float" optional="true" value="1.0" label="Kernel scaling factor" help="Scaling factor of RBF, polynomial, exponential chi^2 and sigmoid affinity kernel. Ignored for affinity=''nearest_neighbors''."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	499 <param argument="affinity" type="select" label="Affinity" help="Affinity kernel to use. ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	500 <option value="rbf" selected="true">RBF</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	501 <option value="precomputed">precomputed</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	502 <option value="nearest_neighbors">Nearset neighbors</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	503 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	504 <param argument="n_neighbors" type="integer" optional="true" value="10" label="Number of neighbors" help="Number of neighbors to use when constructing the affinity matrix using the nearest neighbors method. Ignored for affinity=''rbf''"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	505 <!--param argument="eigen_tol"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	506 <param argument="assign_labels" type="select" label="Assign labels" help="The strategy to use to assign labels in the embedding space.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	507 <option value="kmeans" selected="true">kmeans</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	508 <option value="discretize">discretize</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	509 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	510 <param argument="degree" type="integer" optional="true" value="3"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	511 label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	512 <param argument="coef0" type="integer" optional="true" value="1"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	513 label="Zero coefficient (polynomial and sigmoid kernels only)" help="Ignored by other kernels. dafault : 1 "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	514 <!--param argument="kernel_params"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	515 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	516 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	517
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	518 <xml name="minibatch_kmeans_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	519 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	520 <expand macro="n_clusters"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	521 <expand macro="init"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	522 <expand macro="n_init" default_value="3"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	523 <expand macro="max_iter" default_value="100"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	524 <expand macro="tol" help_text="Early stopping heuristics based on normalized center change. To disable set to 0.0 ."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	525 <expand macro="random_state"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	526 <param argument="batch_size" type="integer" optional="true" value="100" label="Batch size" help="Size of the mini batches."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	527 <!--param argument="compute_labels"-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	528 <param argument="max_no_improvement" type="integer" optional="true" value="10" label="Maximum number of improvement attempts" help="
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	529 Convergence detection based on inertia (the consecutive number of mini batches that doe not yield an improvement on the smoothed inertia).
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	530 To disable, set max_no_improvement to None. "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	531 <param argument="init_size" type="integer" optional="true" value="" label="Number of random initialization samples" help="Number of samples to randomly sample for speeding up the initialization . ( default: 3 * batch_size )"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	532 <param argument="reassignment_ratio" type="float" optional="true" value="0.01" label="Re-assignment ratio" help="Controls the fraction of the maximum number of counts for a center to be reassigned. Higher values yield better clustering results."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	533 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	534 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	535
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	536 <xml name="kmeans_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	537 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	538 <expand macro="n_clusters"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	539 <expand macro="init"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	540 <expand macro="n_init"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	541 <expand macro="max_iter"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	542 <expand macro="tol" default_value="0.0001" help_text="Relative tolerance with regards to inertia to declare convergence."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	543 <!--param argument="precompute_distances"/-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	544 <expand macro="random_state"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	545 <param argument="copy_x" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Use a copy of data for precomputing distances" help="Mofifying the original data introduces small numerical differences caused by subtracting and then adding the data mean."/>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	546 <expand macro="kmeans_algorithm"/>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	547 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	548 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	549
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	550 <xml name="kmeans_algorithm">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	551 <param argument="algorithm" type="select" label="K-means algorithm to use:">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	552 <option value="auto" selected="true">auto</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	553 <option value="full">full</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	554 <option value="elkan">elkan</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	555 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	556 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	557
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	558 <xml name="birch_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	559 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	560 <param argument="threshold" type="float" optional="true" value="0.5" label="Subcluster radius threshold" help="The radius of the subcluster obtained by merging a new sample; the closest subcluster should be less than the threshold to avoid a new subcluster."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	561 <param argument="branching_factor" type="integer" optional="true" value="50" label="Maximum number of subclusters per branch" help="Maximum number of CF subclusters in each node."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	562 <expand macro="n_clusters" default_value="3"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	563 <!--param argument="compute_labels"/-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	564 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	565 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	566
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	567 <xml name="dbscan_advanced_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	568 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	569 <param argument="eps" type="float" optional="true" value="0.5" label="Maximum neighborhood distance" help="The maximum distance between two samples for them to be considered as in the same neighborhood."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	570 <param argument="min_samples" type="integer" optional="true" value="5" label="Minimal core point density" help="The number of samples (or total weight) in a neighborhood for a point (including the point itself) to be considered as a core point."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	571 <param argument="metric" type="text" optional="true" value="euclidean" label="Metric" help="The metric to use when calculating distance between instances in a feature array."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	572 <param argument="algorithm" type="select" label="Pointwise distance computation algorithm" help="The algorithm to be used by the NearestNeighbors module to compute pointwise distances and find nearest neighbors.">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	573 <option value="auto" selected="true">auto</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	574 <option value="ball_tree">ball_tree</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	575 <option value="kd_tree">kd_tree</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	576 <option value="brute">brute</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	577 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	578 <param argument="leaf_size" type="integer" optional="true" value="30" label="Leaf size" help="Leaf size passed to BallTree or cKDTree. Memory and time efficieny factor in tree constrution and querying."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	579 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	580 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	581
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	582 <xml name="clustering_algorithms_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	583 <conditional name="algorithm_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	584 <param name="selected_algorithm" type="select" label="Clustering Algorithm">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	585 <option value="KMeans" selected="true">KMeans</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	586 <option value="SpectralClustering">Spectral Clustering</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	587 <option value="MiniBatchKMeans">Mini Batch KMeans</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	588 <option value="DBSCAN">DBSCAN</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	589 <option value="Birch">Birch</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	590 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	591 <when value="KMeans">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	592 <expand macro="kmeans_advanced_options"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	593 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	594 <when value="DBSCAN">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	595 <expand macro="dbscan_advanced_options"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	596 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	597 <when value="Birch">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	598 <expand macro="birch_advanced_options"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	599 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	600 <when value="SpectralClustering">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	601 <expand macro="spectral_clustering_advanced_options"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	602 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	603 <when value="MiniBatchKMeans">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	604 <expand macro="minibatch_kmeans_advanced_options"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	605 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	606 </conditional>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	607 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	608
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	609 <xml name="distance_metrics">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	610 <param argument="metric" type="select" label="Distance metric" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	611 <option value="euclidean" selected="true">euclidean</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	612 <option value="cityblock">cityblock</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	613 <option value="cosine">cosine</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	614 <option value="l1">l1</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	615 <option value="l2">l2</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	616 <option value="manhattan">manhattan</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	617 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	618 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	619 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	620
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	621 <xml name="distance_nonsparse_metrics">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	622 <option value="braycurtis">braycurtis</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	623 <option value="canberra">canberra</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	624 <option value="chebyshev">chebyshev</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	625 <option value="correlation">correlation</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	626 <option value="dice">dice</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	627 <option value="hamming">hamming</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	628 <option value="jaccard">jaccard</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	629 <option value="kulsinski">kulsinski</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	630 <option value="mahalanobis">mahalanobis</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	631 <option value="matching">matching</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	632 <option value="minkowski">minkowski</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	633 <option value="rogerstanimoto">rogerstanimoto</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	634 <option value="russellrao">russellrao</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	635 <option value="seuclidean">seuclidean</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	636 <option value="sokalmichener">sokalmichener</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	637 <option value="sokalsneath">sokalsneath</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	638 <option value="sqeuclidean">sqeuclidean</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	639 <option value="yule">yule</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	640 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	641
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	642 <xml name="pairwise_kernel_metrics">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	643 <param argument="metric" type="select" label="Pirwise Kernel metric" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	644 <option value="rbf" selected="true">rbf</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	645 <option value="sigmoid">sigmoid</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	646 <option value="polynomial">polynomial</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	647 <option value="linear" selected="true">linear</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	648 <option value="chi2">chi2</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	649 <option value="additive_chi2">additive_chi2</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	650 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	651 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	652
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	653 <xml name="sparse_pairwise_metric_functions">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	654 <param name="selected_metric_function" type="select" label="Select the pairwise metric you want to compute:">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	655 <option value="euclidean_distances" selected="true">Euclidean distance matrix</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	656 <option value="pairwise_distances">Distance matrix</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	657 <option value="pairwise_distances_argmin">Minimum distances between one point and a set of points</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	658 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	659 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	660 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	661
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	662 <xml name="pairwise_metric_functions">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	663 <option value="additive_chi2_kernel" >Additive chi-squared kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	664 <option value="chi2_kernel">Exponential chi-squared kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	665 <option value="linear_kernel">Linear kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	666 <option value="manhattan_distances">L1 distances</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	667 <option value="pairwise_kernels">Kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	668 <option value="polynomial_kernel">Polynomial kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	669 <option value="rbf_kernel">Gaussian (rbf) kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	670 <option value="laplacian_kernel">Laplacian kernel</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	671 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	672
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	673 <xml name="sparse_pairwise_condition">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	674 <when value="pairwise_distances">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	675 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	676 <expand macro="distance_metrics">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	677 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	678 </expand>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	679 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	680 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	681 <when value="euclidean_distances">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	682 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	683 <param argument="squared" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	684 label="Return squared Euclidean distances" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	685 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	686 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	687 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	688
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	689 <xml name="argmin_distance_condition">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	690 <when value="pairwise_distances_argmin">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	691 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	692 <param argument="axis" type="integer" optional="true" value="1" label="Axis" help="Axis along which the argmin and distances are to be computed."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	693 <expand macro="distance_metrics">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	694 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	695 </expand>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	696 <param argument="batch_size" type="integer" optional="true" value="500" label="Batch size" help="Number of rows to be processed in each batch run."/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	697 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	698 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	699 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	700
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	701 <xml name="sparse_preprocessors">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	702 <param name="selected_pre_processor" type="select" label="Select a preprocessor:">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	703 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	704 <option value="Binarizer">Binarizer (Binarizes data)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	705 <option value="Imputer">Imputer (Completes missing values)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	706 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	707 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	708 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	709 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	710 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	711
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	712 <xml name="sparse_preprocessors_ext">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	713 <expand macro="sparse_preprocessors">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	714 <option value="KernelCenterer">Kernel Centerer (Centers a kernel matrix)</option>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	715 <option value="MinMaxScaler">Minmax Scaler (Scales features to a range)</option>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	716 <option value="PolynomialFeatures">Polynomial Features (Generates polynomial and interaction features)</option>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	717 <option value="RobustScaler">Robust Scaler (Scales features using outlier-invariance statistics)</option>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	718 </expand>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	719 </xml>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	720
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	721 <xml name="sparse_preprocessor_options">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	722 <when value="Binarizer">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	723 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	724 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	725 label="Use a copy of data for precomputing binarization" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	726 <param argument="threshold" type="float" optional="true" value="0.0"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	727 label="Threshold"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	728 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	729 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	730 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	731 <when value="Imputer">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	732 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	733 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	734 label="Use a copy of data for precomputing imputation" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	735 <param argument="strategy" type="select" optional="true" label="Imputation strategy" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	736 <option value="mean" selected="true">Replace missing values using the mean along the axis</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	737 <option value="median">Replace missing values using the median along the axis</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	738 <option value="most_frequent">Replace missing using the most frequent value along the axis</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	739 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	740 <param argument="missing_values" type="text" optional="true" value="NaN"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	741 label="Placeholder for missing values" help="For missing values encoded as numpy.nan, use the string value “NaN”"/>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	742 <!--param argument="axis" type="boolean" optional="true" truevalue="1" falsevalue="0"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	743 label="Impute along axis = 1" help="If fasle, axis = 0 is selected for imputation. "/> -->
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	744 <!--param argument="axis" type="select" optional="true" label="The axis along which to impute" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	745 <option value="0" selected="true">Impute along columns</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	746 <option value="1">Impute along rows</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	747 </param-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	748 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	749 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	750 <when value="StandardScaler">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	751 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	752 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	753 label="Use a copy of data for performing inplace scaling" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	754 <param argument="with_mean" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	755 label="Center the data before scaling" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	756 <param argument="with_std" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	757 label="Scale the data to unit variance (or unit standard deviation)" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	758 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	759 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	760 <when value="MaxAbsScaler">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	761 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	762 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	763 label="Use a copy of data for precomputing scaling" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	764 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	765 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	766 <when value="Normalizer">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	767 <section name="options" title="Advanced Options" expanded="False">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	768 <param argument="norm" type="select" optional="true" label="The norm to use to normalize non zero samples" help=" ">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	769 <option value="l1" selected="true">l1</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	770 <option value="l2">l2</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	771 <option value="max">max</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	772 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	773 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true"
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	774 label="Use a copy of data for precomputing row normalization" help=" "/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	775 </section>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	776 </when>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	777 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	778 </xml>
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	779
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	780 <xml name="sparse_preprocessor_options_ext">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	781 <expand macro="sparse_preprocessor_options">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	782 <when value="KernelCenterer">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	783 <section name="options" title="Advanced Options" expanded="False">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	784 </section>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	785 </when>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	786 <when value="MinMaxScaler">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	787 <section name="options" title="Advanced Options" expanded="False">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	788 <!--feature_range-->
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	789 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	790 label="Use a copy of data for precomputing normalization" help=" "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	791 </section>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	792 </when>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	793 <when value="PolynomialFeatures">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	794 <section name="options" title="Advanced Options" expanded="False">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	795 <param argument="degree" type="integer" optional="true" value="2" label="The degree of the polynomial features " help=""/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	796 <param argument="interaction_only" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Produce interaction features only" help="(Features that are products of at most degree distinct input features) "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	797 <param argument="include_bias" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Include a bias column" help="Feature in which all polynomial powers are zero "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	798 </section>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	799 </when>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	800 <when value="RobustScaler">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	801 <section name="options" title="Advanced Options" expanded="False">
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	802 <!--=True, =True, copy=True-->
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	803 <param argument="with_centering" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	804 label="Center the data before scaling" help=" "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	805 <param argument="with_scaling" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	806 label="Scale the data to interquartile range" help=" "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	807 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true"
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	808 label="Use a copy of data for inplace scaling" help=" "/>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	809 </section>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	810 </when>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	811 </expand>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	812 </xml>
fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	813
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	814 <xml name="cv_splitter">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	815 <option value="default" selected="true">default splitter</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	816 <option value="KFold">KFold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	817 <option value="StratifiedKFold">StratifiedKFold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	818 <option value="LeaveOneOut">LeaveOneOut</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	819 <option value="LeavePOut">LeavePOut</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	820 <option value="RepeatedKFold">RepeatedKFold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	821 <option value="RepeatedStratifiedKFold">RepeatedStratifiedKFold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	822 <option value="ShuffleSplit">ShuffleSplit</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	823 <option value="StratifiedShuffleSplit">StratifiedShuffleSplit</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	824 <option value="TimeSeriesSplit">TimeSeriesSplit</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	825 <option value="PredefinedSplit">PredefinedSplit</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	826 <yield/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	827 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	828
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	829 <xml name="cv_splitter_options">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	830 <when value="default">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	831 <expand macro="cv_n_splits"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	832 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	833 <when value="KFold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	834 <expand macro="cv_n_splits"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	835 <expand macro="cv_shuffle"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	836 <expand macro="random_state"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	837 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	838 <when value="StratifiedKFold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	839 <expand macro="cv_n_splits"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	840 <expand macro="cv_shuffle"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	841 <expand macro="random_state"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	842 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	843 <when value="LeaveOneOut">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	844 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	845 <when value="LeavePOut">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	846 <param argument="p" type="integer" value="" label="p" help="Integer. Size of the test sets."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	847 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	848 <when value="RepeatedKFold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	849 <expand macro="cv_n_splits" value="5"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	850 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	851 <expand macro="random_state" />
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	852 </when>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	853 <when value="RepeatedStratifiedKFold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	854 <expand macro="cv_n_splits" value="5"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	855 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	856 <expand macro="random_state" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	857 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	858 <when value="ShuffleSplit">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	859 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	860 <expand macro="cv_test_size" value="0.1" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	861 <expand macro="random_state"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	862 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	863 <when value="StratifiedShuffleSplit">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	864 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	865 <expand macro="cv_test_size" value="0.1" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	866 <expand macro="random_state"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	867 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	868 <when value="TimeSeriesSplit">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	869 <expand macro="cv_n_splits"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	870 <param argument="max_train_size" type="integer" value="" optional="true" label="Maximum size of the training set" help="Maximum size for a single training set." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	871 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	872 <when value="PredefinedSplit">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	873 <param argument="test_fold" type="text" value="" area="true" label="test_fold" help="List, e.g., [0, 1, -1, 1], represents two test sets, [X[0]] and [X[1], X[3]], X[2] is excluded from any test set due to '-1'."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	874 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	875 <yield/>
2 dd502cb0d567 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978 bgruening parents: 1 diff changeset	876 </xml>
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	877
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	878 <xml name="cv">
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	879 <conditional name="cv_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	880 <param name="selected_cv" type="select" label="Select the cv splitter:">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	881 <expand macro="cv_splitter">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	882 <option value="GroupKFold">GroupKFold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	883 <option value="GroupShuffleSplit">GroupShuffleSplit</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	884 <option value="LeaveOneGroupOut">LeaveOneGroupOut</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	885 <option value="LeavePGroupsOut">LeavePGroupsOut</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	886 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	887 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	888 <expand macro="cv_splitter_options">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	889 <when value="GroupKFold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	890 <expand macro="cv_n_splits"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	891 <expand macro="cv_groups" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	892 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	893 <when value="GroupShuffleSplit">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	894 <expand macro="cv_n_splits" value="5"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	895 <expand macro="cv_test_size"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	896 <expand macro="random_state"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	897 <expand macro="cv_groups"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	898 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	899 <when value="LeaveOneGroupOut">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	900 <expand macro="cv_groups"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	901 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	902 <when value="LeavePGroupsOut">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	903 <param argument="n_groups" type="integer" value="" label="n_groups" help="Number of groups (p) to leave out in the test split." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	904 <expand macro="cv_groups"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	905 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	906 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	907 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	908 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	909
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	910 <xml name="cv_reduced">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	911 <conditional name="cv_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	912 <param name="selected_cv" type="select" label="Select the cv splitter:">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	913 <expand macro="cv_splitter"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	914 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	915 <expand macro="cv_splitter_options"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	916 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	917 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	918
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	919 <xml name="cv_n_splits" token_value="3" token_help="Number of folds. Must be at least 2.">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	920 <param argument="n_splits" type="integer" value="@VALUE@" min="2" label="n_splits" help="@HELP@"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	921 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	922
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	923 <xml name="cv_shuffle">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	924 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to shuffle data before splitting" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	925 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	926
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	927 <xml name="cv_test_size" token_value="0.2">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	928 <param argument="test_size" type="float" value="@VALUE@" min="0.0" label="Portion or number of the test set" help="0.0-1.0, proportion of the dataset to include in the test split; >1, integer only, the absolute number of test samples "/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	929 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	930
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	931 <xml name="cv_groups" >
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	932 <param argument="groups" type="text" value="" area="true" label="Groups" help="Group lables in a list. e.g., [1, 1, 2, 2, 3, 3, 3]"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	933 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	934
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	935 <xml name="feature_selection_algorithms">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	936 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	937 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	938 <option value="SelectPercentile">SelectPercentile - Select features according to a percentile of the highest scores</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	939 <option value="SelectFpr">SelectFpr - Filter: Select the p-values below alpha based on a FPR test</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	940 <option value="SelectFdr">SelectFdr - Filter: Select the p-values for an estimated false discovery rate</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	941 <option value="SelectFwe">SelectFwe - Filter: Select the p-values corresponding to Family-wise error rate</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	942 <option value="VarianceThreshold">VarianceThreshold - Feature selector that removes all low-variance features</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	943 <option value="SelectFromModel">SelectFromModel - Meta-transformer for selecting features based on importance weights</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	944 <option value="RFE">RFE - Feature ranking with recursive feature elimination</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	945 <option value="RFECV">RFECV - Feature ranking with recursive feature elimination and cross-validated selection of the best number of features</option>
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	946 </xml>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	947
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	948 <xml name="feature_selection_algorithm_details">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	949 <when value="GenericUnivariateSelect">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	950 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	951 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	952 <param argument="mode" type="select" label="Feature selection mode">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	953 <option value="percentile">percentile</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	954 <option value="k_best">k_best</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	955 <option value="fpr">fpr</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	956 <option value="fdr">fdr</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	957 <option value="fwe">fwe</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	958 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	959 <param argument="param" type="float" value="" optional="true" label="Parameter of the corresponding mode" help="float or int depending on the feature selection mode" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	960 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	961 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	962 <when value="SelectPercentile">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	963 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	964 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	965 <param argument="percentile" type="integer" value="10" optional="True" label="Percent of features to keep" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	966 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	967 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	968 <when value="SelectKBest">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	969 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	970 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	971 <param argument="k" type="integer" value="10" optional="True" label="Number of top features to select" help="No 'all' option is supported." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	972 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	973 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	974 <when value="SelectFpr">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	975 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	976 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	977 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest p-value for features to be kept."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	978 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	979 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	980 <when value="SelectFdr">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	981 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	982 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	983 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	984 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	985 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	986 <when value="SelectFwe">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	987 <expand macro="feature_selection_score_function" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	988 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	989 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	990 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	991 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	992 <when value="VarianceThreshold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	993 <section name="options" title="Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	994 <param argument="threshold" type="float" value="" optional="True" label="Threshold" help="Features with a training-set variance lower than this threshold will be removed."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	995 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	996 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	997 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	998
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	999 <xml name="feature_selection_SelectFromModel">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1000 <when value="SelectFromModel">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1001 <conditional name="model_inputter">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1002 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" >
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1003 <option value="new" selected="true">Yes</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1004 <option value="prefitted">No. Load a prefitted estimator</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1005 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1006 <when value="new">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1007 <expand macro="estimator_selector_fs"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1008 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1009 <when value="prefitted">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1010 <param name="fitted_estimator" type="data" format='zip' label="Load a prefitted estimator" />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1011 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1012 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1013 <expand macro="feature_selection_SelectFromModel_options"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1014 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1015 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1016
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1017 <xml name="feature_selection_SelectFromModel_no_prefitted">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1018 <when value="SelectFromModel">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1019 <conditional name="model_inputter">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1020 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" >
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1021 <option value="new" selected="true">Yes</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1022 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1023 <when value="new">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1024 <expand macro="estimator_selector_all"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1025 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1026 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1027 <expand macro="feature_selection_SelectFromModel_options"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1028 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1029 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1030
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1031 <xml name="feature_selection_SelectFromModel_options">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1032 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1033 <param argument="threshold" type="text" value="" optional="true" label="threshold" help="The threshold value to use for feature selection. e.g. 'mean', 'median', '1.25*mean'." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1034 <param argument="norm_order" type="integer" value="1" label="norm_order" help="Order of the norm used to filter the vectors of coefficients below threshold in the case where the coef_ attribute of the estimator is of dimension 2. " />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1035 <param argument="max_features" type="integer" value="" optional="true" label="The maximum number of features selected scoring above threshold" help="To disable threshold and only select based on max_features, set threshold=-np.inf."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1036 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1037 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1038
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1039 <xml name="feature_selection_RFE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1040 <when value="RFE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1041 <yield/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1042 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1043 <param argument="n_features_to_select" type="integer" value="" optional="true" label="n_features_to_select" help="The number of features to select. If None, half of the features are selected." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1044 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1045 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1046 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1047 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1048 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1049
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1050 <xml name="feature_selection_RFECV">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1051 <when value="RFECV">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1052 <yield/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1053 <section name="options" title="Advanced Options" expanded="False">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1054 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1055 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1056 <expand macro="cv_reduced"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1057 <expand macro="scoring_selection"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1058 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." />
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1059 </section>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1060 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1061 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1062
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1063 <xml name="feature_selection_pipeline">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1064 <!--compare to `feature_selection_fs`, no fitted estimator for SelectFromModel and no customer estimator for RFE and RFECV-->
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1065 <conditional name="fs_algorithm_selector">
1 02eadaaa4bf7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832 bgruening parents: 0 diff changeset	1066 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm">
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1067 <expand macro="feature_selection_algorithms"/>
1 02eadaaa4bf7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832 bgruening parents: 0 diff changeset	1068 </param>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1069 <expand macro="feature_selection_algorithm_details"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1070 <expand macro="feature_selection_SelectFromModel_no_prefitted"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1071 <expand macro="feature_selection_RFE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1072 <expand macro="estimator_selector_all"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1073 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1074 <expand macro="feature_selection_RFECV">
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1075 <expand macro="estimator_selector_all"/>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1076 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1077 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1078 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1079
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1080 <xml name="feature_selection_fs">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1081 <conditional name="fs_algorithm_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1082 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1083 <expand macro="feature_selection_algorithms"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1084 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1085 <expand macro="feature_selection_algorithm_details"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1086 <expand macro="feature_selection_SelectFromModel"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1087 <expand macro="feature_selection_RFE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1088 <expand macro="estimator_selector_fs"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1089 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1090 <expand macro="feature_selection_RFECV">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1091 <expand macro="estimator_selector_fs"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1092 </expand>
1 02eadaaa4bf7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832 bgruening parents: 0 diff changeset	1093 </conditional>
02eadaaa4bf7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832 bgruening parents: 0 diff changeset	1094 </xml>
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	1095
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1096 <xml name="feature_selection_score_function">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1097 <param argument="score_func" type="select" label="Select a score function">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1098 <option value="chi2">chi2 - Compute chi-squared stats between each non-negative feature and class</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1099 <option value="f_classif">f_classif - Compute the ANOVA F-value for the provided sample</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1100 <option value="f_regression">f_regression - Univariate linear regression tests</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1101 <option value="mutual_info_classif">mutual_info_classif - Estimate mutual information for a discrete target variable</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1102 <option value="mutual_info_regression">mutual_info_regression - Estimate mutual information for a continuous target variable</option>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1103 </param>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1104 </xml>
8 fd7a054ffdbd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48 bgruening parents: 6 diff changeset	1105
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1106 <xml name="model_validation_common_options">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1107 <expand macro="cv"/>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1108 <expand macro="verbose"/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1109 <yield/>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1110 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1111
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1112 <xml name="scoring_selection">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1113 <conditional name="scoring">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1114 <param name="primary_scoring" type="select" multiple="false" label="Select the primary metric (scoring):" help="Metric to refit the best estimator.">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1115 <option value="default" selected="true">default with estimator</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1116 <option value="accuracy">Classification -- 'accuracy'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1117 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1118 <option value="average_precision">Classification -- 'average_precision'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1119 <option value="f1">Classification -- 'f1'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1120 <option value="f1_micro">Classification -- 'f1_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1121 <option value="f1_macro">Classification -- 'f1_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1122 <option value="f1_weighted">Classification -- 'f1_weighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1123 <option value="f1_samples">Classification -- 'f1_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1124 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1125 <option value="precision">Classification -- 'precision'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1126 <option value="precision_micro">Classification -- 'precision_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1127 <option value="precision_macro">Classification -- 'precision_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1128 <option value="precision_wighted">Classification -- 'precision_wighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1129 <option value="precision_samples">Classification -- 'precision_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1130 <option value="recall">Classification -- 'recall'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1131 <option value="recall_micro">Classification -- 'recall_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1132 <option value="recall_macro">Classification -- 'recall_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1133 <option value="recall_wighted">Classification -- 'recall_wighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1134 <option value="recall_samples">Classification -- 'recall_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1135 <option value="roc_auc">Classification -- 'roc_auc'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1136 <option value="explained_variance">Regression -- 'explained_variance'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1137 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1138 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1139 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1140 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1141 <option value="r2">Regression -- 'r2'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1142 </param>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1143 <when value="default"/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1144 <when value="accuracy"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1145 <when value="balanced_accuracy"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1146 <when value="average_precision"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1147 <when value="f1"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1148 <when value="f1_micro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1149 <when value="f1_macro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1150 <when value="f1_weighted"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1151 <when value="f1_samples"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1152 <when value="neg_log_loss"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1153 <when value="precision"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1154 <when value="precision_micro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1155 <when value="precision_macro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1156 <when value="precision_wighted"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1157 <when value="precision_samples"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1158 <when value="recall"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1159 <when value="recall_micro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1160 <when value="recall_macro"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1161 <when value="recall_wighted"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1162 <when value="recall_samples"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1163 <when value="roc_auc"><expand macro="secondary_scoring_selection_classification"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1164 <when value="explained_variance"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1165 <when value="neg_mean_absolute_error"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1166 <when value="neg_mean_squared_error"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1167 <when value="neg_mean_squared_log_error"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1168 <when value="neg_median_absolute_error"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1169 <when value="r2"><expand macro="secondary_scoring_selection_regression"/></when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1170 </conditional>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1171 </xml>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1172
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1173 <xml name="secondary_scoring_selection_classification">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1174 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored.">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1175 <option value="accuracy">Classification -- 'accuracy'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1176 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1177 <option value="average_precision">Classification -- 'average_precision'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1178 <option value="f1">Classification -- 'f1'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1179 <option value="f1_micro">Classification -- 'f1_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1180 <option value="f1_macro">Classification -- 'f1_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1181 <option value="f1_weighted">Classification -- 'f1_weighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1182 <option value="f1_samples">Classification -- 'f1_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1183 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1184 <option value="precision">Classification -- 'precision'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1185 <option value="precision_micro">Classification -- 'precision_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1186 <option value="precision_macro">Classification -- 'precision_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1187 <option value="precision_wighted">Classification -- 'precision_wighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1188 <option value="precision_samples">Classification -- 'precision_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1189 <option value="recall">Classification -- 'recall'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1190 <option value="recall_micro">Classification -- 'recall_micro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1191 <option value="recall_macro">Classification -- 'recall_macro'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1192 <option value="recall_wighted">Classification -- 'recall_wighted'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1193 <option value="recall_samples">Classification -- 'recall_samples'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1194 <option value="roc_auc">Classification -- 'roc_auc'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1195 </param>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1196 </xml>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1197
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1198 <xml name="secondary_scoring_selection_regression">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1199 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored.">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1200 <option value="explained_variance">Regression -- 'explained_variance'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1201 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1202 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1203 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1204 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1205 <option value="r2">Regression -- 'r2'</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1206 </param>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1207 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1208
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1209 <xml name="pre_dispatch" token_type="hidden" token_default_value="all" token_help="Number of predispatched jobs for parallel execution">
2 dd502cb0d567 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978 bgruening parents: 1 diff changeset	1210 <param argument="pre_dispatch" type="@TYPE@" value="@DEFAULT_VALUE@" optional="true" label="pre_dispatch" help="@HELP@"/>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1211 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1212
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1213 <xml name="search_cv_estimator">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1214 <param name="infile_pipeline" type="data" format="zip" label="Choose the dataset containing pipeline object:"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1215 <section name="search_params_builder" title="Search parameters Builder" expanded="true">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1216 <repeat name="param_set" min="1" max="20" title="Parameter setting for search:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1217 <conditional name="search_param_selector">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1218 <param name="selected_param_type" type="select" label="Choose the transformation the parameter belongs to">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1219 <option value="final_estimator_p" selected="true">Final estimator</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1220 <option value="prep_1_p">Pre-processing step #1</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1221 <option value="prep_2_p">Pre-processing step #2</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1222 <option value="prep_3_p">Pre-processing step #3</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1223 <option value="prep_4_p">Pre-processing step #4</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1224 <option value="prep_5_p">Pre-processing step #5</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1225 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1226 <when value="final_estimator_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1227 <expand macro="search_param_input" />
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1228 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1229 <when value="prep_1_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1230 <expand macro="search_param_input" label="Pre_processing component #1 parameter:" help="One parameter per box. For example: with_centering: [True, False]."/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1231 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1232 <when value="prep_2_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1233 <expand macro="search_param_input" label="Pre_processing component #2 parameter:" help="One parameter per box. For example: k: [3, 5, 7, 9]. See bottom for more examples"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1234 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1235 <when value="prep_3_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1236 <expand macro="search_param_input" label="Pre_processing component #3 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1237 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1238 <when value="prep_4_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1239 <expand macro="search_param_input" label="Pre_processing component #4 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1240 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1241 <when value="prep_5_p">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1242 <expand macro="search_param_input" label="Pre_processing component #5 parameter:" help="One parameter per box. For example: affinity: ['euclidean', 'l1', 'l2', 'manhattan']. See bottom for more examples"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1243 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1244 </conditional>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1245 </repeat>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1246 </section>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1247 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1248
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1249 <xml name="search_param_input" token_label="Estimator parameter:" token_help="One parameter per box. For example: C: [1, 10, 100, 1000]. See bottom for more examples">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1250 <param name="search_p" type="text" value="" optional="true" label="@LABEL@" help="@HELP@">
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1251 <sanitizer>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1252 <valid initial="default">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1253 <add value="'"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1254 <add value="""/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1255 <add value="["/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1256 <add value="]"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1257 </valid>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1258 </sanitizer>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1259 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1260 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1261
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1262 <xml name="search_cv_options">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1263 <expand macro="scoring_selection"/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1264 <expand macro="model_validation_common_options"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1265 <expand macro="pre_dispatch" value="2*n_jobs" help="Controls the number of jobs that get dispatched during parallel execution"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1266 <param argument="iid" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="iid" help="If True, data is identically distributed across the folds"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1267 <param argument="refit" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="refit" help="Refit an estimator using the best found parameters on the whole dataset."/>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1268 <param argument="error_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Raise fit error:" help="If false, the metric score is assigned to NaN if an error occurs in estimator fitting and FitFailedWarning is raised."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1269 <param argument="return_train_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="return_train_score" help=""/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1270 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1271
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1272 <xml name="estimator_module_options">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1273 <option value="svm" selected="true">sklearn.svm</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1274 <option value="linear_model">sklearn.linear_model</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1275 <option value="ensemble">sklearn.ensemble</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1276 <option value="naive_bayes">sklearn.naive_bayes</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1277 <option value="tree">sklearn.tree</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1278 <option value="neighbors">sklearn.neighbors</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1279 <option value="xgboost">xgboost</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1280 <yield/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1281 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1282
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1283 <xml name="estimator_suboptions">
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1284 <when value="svm">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1285 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1286 <option value="LinearSVC" selected="true">LinearSVC</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1287 <option value="LinearSVR">LinearSVR</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1288 <option value="NuSVC">NuSVC</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1289 <option value="NuSVR">NuSVR</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1290 <option value="OneClassSVM">OneClassSVM</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1291 <option value="SVC">SVC</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1292 <option value="SVR">SVR</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1293 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1294 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1295 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1296 <when value="linear_model">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1297 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1298 <option value="ARDRegression" selected="true">ARDRegression</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1299 <option value="BayesianRidge">BayesianRidge</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1300 <option value="ElasticNet">ElasticNet</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1301 <option value="ElasticNetCV">ElasticNetCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1302 <option value="HuberRegressor">HuberRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1303 <option value="Lars">Lars</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1304 <option value="LarsCV">LarsCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1305 <option value="Lasso">Lasso</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1306 <option value="LassoCV">LassoCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1307 <option value="LassoLars">LassoLars</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1308 <option value="LassoLarsCV">LassoLarsCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1309 <option value="LassoLarsIC">LassoLarsIC</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1310 <option value="LinearRegression">LinearRegression</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1311 <option value="LogisticRegression">LogisticRegression</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1312 <option value="LogisticRegressionCV">LogisticRegressionCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1313 <option value="MultiTaskLasso">MultiTaskLasso</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1314 <option value="MultiTaskElasticNet">MultiTaskElasticNet</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1315 <option value="MultiTaskLassoCV">MultiTaskLassoCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1316 <option value="MultiTaskElasticNetCV">MultiTaskElasticNetCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1317 <option value="OrthogonalMatchingPursuit">OrthogonalMatchingPursuit</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1318 <option value="OrthogonalMatchingPursuitCV">OrthogonalMatchingPursuitCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1319 <option value="PassiveAggressiveClassifier">PassiveAggressiveClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1320 <option value="PassiveAggressiveRegressor">PassiveAggressiveRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1321 <option value="Perceptron">Perceptron</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1322 <option value="RANSACRegressor">RANSACRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1323 <option value="Ridge">Ridge</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1324 <option value="RidgeClassifier">RidgeClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1325 <option value="RidgeClassifierCV">RidgeClassifierCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1326 <option value="RidgeCV">RidgeCV</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1327 <option value="SGDClassifier">SGDClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1328 <option value="SGDRegressor">SGDRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1329 <option value="TheilSenRegressor">TheilSenRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1330 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1331 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1332 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1333 <when value="ensemble">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1334 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1335 <option value="AdaBoostClassifier" selected="true">AdaBoostClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1336 <option value="AdaBoostRegressor">AdaBoostRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1337 <option value="BaggingClassifier">BaggingClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1338 <option value="BaggingRegressor">BaggingRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1339 <option value="ExtraTreesClassifier">ExtraTreesClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1340 <option value="ExtraTreesRegressor">ExtraTreesRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1341 <option value="GradientBoostingClassifier">GradientBoostingClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1342 <option value="GradientBoostingRegressor">GradientBoostingRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1343 <option value="IsolationForest">IsolationForest</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1344 <option value="RandomForestClassifier">RandomForestClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1345 <option value="RandomForestRegressor">RandomForestRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1346 <option value="RandomTreesEmbedding">RandomTreesEmbedding</option>
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1347 <!--option value="VotingClassifier">VotingClassifier</option-->
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1348 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1349 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1350 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1351 <when value="naive_bayes">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1352 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1353 <option value="BernoulliNB" selected="true">BernoulliNB</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1354 <option value="GaussianNB">GaussianNB</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1355 <option value="MultinomialNB">MultinomialNB</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1356 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1357 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1358 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1359 <when value="tree">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1360 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1361 <option value="DecisionTreeClassifier" selected="true">DecisionTreeClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1362 <option value="DecisionTreeRegressor">DecisionTreeRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1363 <option value="ExtraTreeClassifier">ExtraTreeClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1364 <option value="ExtraTreeRegressor">ExtraTreeRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1365 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1366 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1367 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1368 <when value="neighbors">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1369 <param name="selected_estimator" type="select" label="Choose estimator class:">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1370 <option value="KNeighborsClassifier" selected="true">KNeighborsClassifier</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1371 <option value="KNeighborsRegressor">KNeighborsRegressor</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1372 <!--option value="BallTree">BallTree</option-->
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1373 <!--option value="KDTree">KDTree</option-->
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1374 <option value="KernelDensity">KernelDensity</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1375 <option value="LocalOutlierFactor">LocalOutlierFactor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1376 <option value="RadiusNeighborsClassifier">RadiusNeighborsClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1377 <option value="RadiusNeighborsRegressor">RadiusNeighborsRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1378 <option value="NearestCentroid">NearestCentroid</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1379 <option value="NearestNeighbors">NearestNeighbors</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1380 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1381 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1382 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1383 <when value="xgboost">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1384 <param name="selected_estimator" type="select" label="Choose estimator class:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1385 <option value="XGBRegressor" selected="true">XGBRegressor</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1386 <option value="XGBClassifier">XGBClassifier</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1387 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1388 <expand macro="estimator_params_text"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1389 </when>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1390 <yield/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1391 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1392
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1393 <xml name="estimator_selector_all">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1394 <conditional name="estimator_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1395 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" >
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1396 <expand macro="estimator_module_options"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1397 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1398 <expand macro="estimator_suboptions"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1399 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1400 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1401
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1402 <xml name="estimator_selector_fs">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1403 <conditional name="estimator_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1404 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" >
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1405 <expand macro="estimator_module_options">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1406 <option value="customer_estimator">Load a customer estimator</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1407 </expand>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1408 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1409 <expand macro="estimator_suboptions">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1410 <when value="customer_estimator">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1411 <param name="c_estimator" type="data" format="zip" label="Choose the dataset containing the customer estimator or pipeline:"/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1412 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1413 </expand>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1414 </conditional>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1415 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1416
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1417 <xml name="estimator_params_text" token_label="Type in parameter settings if different from default:" token_default_value=''
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1418 token_help="Dictionary-capable, e.g., C=1, kernel='linear'. No double quotes. Leave this box blank for default estimator.">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1419 <param name="text_params" type="text" value="@DEFAULT_VALUE@" optional="true" label="@LABEL@" help="@HELP@">
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1420 <sanitizer>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1421 <valid initial="default">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1422 <add value="'"/>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1423 </valid>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1424 </sanitizer>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1425 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1426 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1427
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1428 <xml name="kernel_approximation_all">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1429 <conditional name="kernel_approximation_selector">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1430 <param name="select_algorithm" type="select" label="Choose a kernel approximation algorithm:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1431 <option value="Nystroem" selected="true">Nystroem</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1432 <option value="RBFSampler">RBFSampler</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1433 <option value="AdditiveChi2Sampler">AdditiveChi2Sampler</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1434 <option value="SkewedChi2Sampler">SkewedChi2Sampler</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1435 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1436 <when value="Nystroem">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1437 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1438 help="Default(=blank): coef0=None, degree=None, gamma=None, kernel='rbf', kernel_params=None, n_components=100, random_state=None. No double quotes"/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1439 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1440 <when value="RBFSampler">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1441 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1442 help="Default(=blank): gamma=1.0, n_components=100, random_state=None."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1443 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1444 <when value="AdditiveChi2Sampler">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1445 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1446 help="Default(=blank): sample_interval=None, sample_steps=2."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1447 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1448 <when value="SkewedChi2Sampler">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1449 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1450 help="Default(=blank): n_components=100, random_state=None, skewedness=1.0."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1451 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1452 </conditional>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1453 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1454
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1455 <xml name="matrix_decomposition_all">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1456 <conditional name="matrix_decomposition_selector">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1457 <param name="select_algorithm" type="select" label="Choose a matrix decomposition algorithm:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1458 <option value="DictionaryLearning" selected="true">DictionaryLearning</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1459 <option value="FactorAnalysis">FactorAnalysis</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1460 <option value="FastICA">FastICA</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1461 <option value="IncrementalPCA">IncrementalPCA</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1462 <option value="KernelPCA">KernelPCA</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1463 <option value="LatentDirichletAllocation">LatentDirichletAllocation</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1464 <option value="MiniBatchDictionaryLearning">MiniBatchDictionaryLearning</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1465 <option value="MiniBatchSparsePCA">MiniBatchSparsePCA</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1466 <option value="NMF">NMF</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1467 <option value="PCA">PCA</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1468 <option value="SparsePCA">SparsePCA</option>
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1469 <!--option value="SparseCoder">SparseCoder</option-->
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1470 <option value="TruncatedSVD">TruncatedSVD</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1471 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1472 <when value="DictionaryLearning">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1473 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1474 help="Default(=blank): alpha=1, code_init=None, dict_init=None, fit_algorithm='lars', max_iter=1000, n_components=None, random_state=None, split_sign=False, tol=1e-08, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1475 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1476 <when value="FactorAnalysis">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1477 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1478 help="Default(=blank): copy=True, iterated_power=3, max_iter=1000, n_components=None, noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1479 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1480 <when value="FastICA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1481 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1482 help="Default(=blank): algorithm='parallel', fun='logcosh', fun_args=None, max_iter=200, n_components=None, random_state=None, tol=0.0001, w_init=None, whiten=True. No double quotes."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1483 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1484 <when value="IncrementalPCA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1485 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1486 help="Default(=blank): batch_size=None, copy=True, n_components=None, whiten=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1487 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1488 <when value="KernelPCA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1489 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1490 help="Default(=blank): alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto', fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None, n_components=None, random_state=None, remove_zero_eig=False, tol=0. No double quotes."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1491 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1492 <when value="LatentDirichletAllocation">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1493 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1494 help="Default(=blank): batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7, learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10, n_topics=None, perp_tol=0.1, random_state=None, topic_word_prior=None, total_samples=1000000.0, verbose=0."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1495 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1496 <when value="MiniBatchDictionaryLearning">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1497 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1498 help="Default(=blank): alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars', n_components=None, n_iter=1000, random_state=None, shuffle=True, split_sign=False, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1499 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1500 <when value="MiniBatchSparsePCA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1501 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1502 help="Default(=blank): alpha=1, batch_size=3, callback=None, method='lars', n_components=None, n_iter=100, random_state=None, ridge_alpha=0.01, shuffle=True, verbose=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1503 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1504 <when value="NMF">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1505 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1506 help="Default(=blank): alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200, n_components=None, random_state=None, shuffle=False, solver='cd', tol=0.0001, verbose=0."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1507 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1508 <when value="PCA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1509 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1510 help="Default(=blank): copy=True, iterated_power='auto', n_components=None, random_state=None, svd_solver='auto', tol=0.0, whiten=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1511 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1512 <when value="SparsePCA">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1513 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1514 help="Default(=blank): U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars', n_components=None, random_state=None, ridge_alpha=0.01, tol=1e-08, verbose=False."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1515 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1516 <when value="TruncatedSVD">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1517 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1518 help="Default(=blank): algorithm='randomized', n_components=2, n_iter=5, random_state=None, tol=0.0."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1519 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1520 </conditional>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1521 </xml>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1522
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1523 <xml name="FeatureAgglomeration">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1524 <conditional name="FeatureAgglomeration_selector">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1525 <param name="select_algorithm" type="select" label="Choose the algorithm:">
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1526 <option value="FeatureAgglomeration" selected="true">FeatureAgglomeration</option>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1527 </param>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1528 <when value="FeatureAgglomeration">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1529 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1530 help="Default(=blank): affinity='euclidean', compute_full_tree='auto', connectivity=None, linkage='ward', memory=None, n_clusters=2, pooling_func=np.mean."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1531 </when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1532 </conditional>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1533 </xml>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1534
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1535 <xml name="skrebate">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1536 <conditional name="skrebate_selector">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1537 <param name="select_algorithm" type="select" label="Choose the algorithm:">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1538 <option value="ReliefF">ReliefF</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1539 <option value="SURF">SURF</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1540 <option value="SURFstar">SURFstar</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1541 <option value="MultiSURF">MultiSURF</option>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1542 <option value="MultiSURFstar">MultiSURFstar</option>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1543 <!--option value="TuRF">TuRF</option> -->
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1544 </param>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1545 <when value="ReliefF">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1546 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1547 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1548 </when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1549 <when value="SURF">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1550 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1551 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1552 </when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1553 <when value="SURFstar">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1554 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1555 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1556 </when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1557 <when value="MultiSURF">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1558 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1559 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1560 </when>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1561 <when value="MultiSURFstar">
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1562 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1563 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False."/>
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1564 </when>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1565 <!--when value="TuRF">
12 2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1566 <expand macro="estimator_params_text"
2c1851992069 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7 bgruening parents: 11 diff changeset	1567 help="Default(=blank): core_algorithm='ReliefF', discrete_threshold=10, n_features_to_select=10, n_neighbors=100, pct=0.5, verbose=False."/>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1568 </when> -->
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1569 </conditional>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1570 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1571
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1572 <xml name="imbalanced_learn_sampling">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1573 <conditional name="imblearn_selector">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1574 <param name="select_algorithm" type="select" label="Choose the algorithm:">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1575 <option value="under_sampling.ClusterCentroids" selected="true">under_sampling.ClusterCentroids</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1576 <option value="under_sampling.CondensedNearestNeighbour">under_sampling.CondensedNearestNeighbour</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1577 <option value="under_sampling.EditedNearestNeighbours">under_sampling.EditedNearestNeighbours</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1578 <option value="under_sampling.RepeatedEditedNearestNeighbours">under_sampling.RepeatedEditedNearestNeighbours</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1579 <option value="under_sampling.AllKNN">under_sampling.AllKNN</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1580 <option value="under_sampling.InstanceHardnessThreshold">under_sampling.InstanceHardnessThreshold</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1581 <option value="under_sampling.NearMiss">under_sampling.NearMiss</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1582 <option value="under_sampling.NeighbourhoodCleaningRule">under_sampling.NeighbourhoodCleaningRule</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1583 <option value="under_sampling.OneSidedSelection">under_sampling.OneSidedSelection</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1584 <option value="under_sampling.RandomUnderSampler">under_sampling.RandomUnderSampler</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1585 <option value="under_sampling.TomekLinks">under_sampling.TomekLinks</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1586 <option value="over_sampling.ADASYN">over_sampling.ADASYN</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1587 <option value="over_sampling.RandomOverSampler">over_sampling.RandomOverSampler</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1588 <option value="over_sampling.SMOTE">over_sampling.SMOTE</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1589 <option value="over_sampling.SVMSMOTE">over_sampling.SVMSMOTE</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1590 <option value="over_sampling.BorderlineSMOTE">over_sampling.BorderlineSMOTE</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1591 <option value="over_sampling.SMOTENC">over_sampling.SMOTENC</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1592 <option value="combine.SMOTEENN">combine.SMOTEENN</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1593 <option value="combine.SMOTETomek">combine.SMOTETomek</option>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1594 </param>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1595 <when value="under_sampling.ClusterCentroids">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1596 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1597 help="Default(=blank): sampling_strategy='auto', random_state=None, estimator=None, voting='auto'."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1598 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1599 <when value="under_sampling.CondensedNearestNeighbour">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1600 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1601 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=None, n_seeds_S=1."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1602 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1603 <when value="under_sampling.EditedNearestNeighbours">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1604 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1605 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, max_iter=100, kind_sel='all'."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1606 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1607 <when value="under_sampling.RepeatedEditedNearestNeighbours">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1608 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1609 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, max_iter=100, kind_sel='all'."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1610 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1611 <when value="under_sampling.AllKNN">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1612 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1613 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, kind_sel='all', allow_minority=False."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1614 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1615 <when value="under_sampling.InstanceHardnessThreshold">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1616 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1617 help="Default(=blank): estimator=None, sampling_strategy='auto', random_state=None, cv=5."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1618 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1619 <when value="under_sampling.NearMiss">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1620 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1621 help="Default(=blank): sampling_strategy='auto', random_state=None, version=1, n_neighbors=3, n_neighbors_ver3=3."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1622 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1623 <when value="under_sampling.NeighbourhoodCleaningRule">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1624 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1625 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, kind_sel='all', threshold_cleaning=0.5."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1626 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1627 <when value="under_sampling.OneSidedSelection">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1628 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1629 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=None, n_seeds_S=1."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1630 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1631 <when value="under_sampling.RandomUnderSampler">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1632 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1633 help="Default(=blank): sampling_strategy='auto', random_state=None, replacement=False."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1634 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1635 <when value="under_sampling.TomekLinks">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1636 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1637 help="Default(=blank): sampling_strategy='auto', random_state=None."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1638 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1639 <when value="over_sampling.ADASYN">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1640 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1641 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=5."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1642 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1643 <when value="over_sampling.RandomOverSampler">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1644 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1645 help="Default(=blank): sampling_strategy='auto', random_state=None."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1646 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1647 <when value="over_sampling.SMOTE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1648 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1649 help="Default(=blank): sampling_strategy='auto', random_state=None, k_neighbors=5."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1650 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1651 <when value="over_sampling.SVMSMOTE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1652 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1653 help="Default(=blank): sampling_strategy='auto', k_neighbors=5, m_neighbors=10, out_step=0.5, random_state=None, svm_estimator=None."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1654 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1655 <when value="over_sampling.BorderlineSMOTE">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1656 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1657 help="Default(=blank): sampling_strategy='auto', k_neighbors=5, kind='borderline-1', m_neighbors=10, random_state=None."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1658 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1659 <when value="over_sampling.SMOTENC">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1660 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1661 help="Default: categorical_features=[], sampling_strategy='auto', random_state=None, k_neighbors=5."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1662 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1663 <when value="combine.SMOTEENN">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1664 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1665 help="Default(=blank): sampling_strategy='auto', random_state=None, smote=None, enn=None."/>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1666 </when>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1667 <when value="combine.SMOTETomek">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1668 <expand macro="estimator_params_text"
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1669 help="Default(=blank): sampling_strategy='auto', random_state=None, smote=None, tomek=None."/>
9 c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1670 </when>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1671 </conditional>
c6b3efcba7bd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd bgruening parents: 8 diff changeset	1672 </xml>
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1673
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1674 <!-- Outputs -->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1675
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1676 <xml name="output">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1677 <outputs>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1678 <data format="tabular" name="outfile_predict">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1679 <filter>selected_tasks['selected_task'] == 'load'</filter>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1680 </data>
14 e244d6f2df1a planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2a058459e6daf0486871f93845f00fdb4a4eaca1 bgruening parents: 13 diff changeset	1681 <data format="zip" name="outfile_fit" label="${tool.name}.${selected_tasks.selected_algorithms.selected_algorithm}">
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1682 <filter>selected_tasks['selected_task'] == 'train'</filter>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1683 </data>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1684 </outputs>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1685 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1686
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1687 <!--Citations-->
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1688 <xml name="eden_citation">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1689 <citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1690 <citation type="doi">10.5281/zenodo.15094</citation>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1691 </citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1692 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1693
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1694 <xml name="sklearn_citation">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1695 <citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1696 <citation type="bibtex">
13 badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1697 @article{scikit-learn,
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1698 title={Scikit-learn: Machine Learning in {P}ython},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1699 author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V.
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1700 and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P.
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1701 and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1702 Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1703 journal={Journal of Machine Learning Research},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1704 volume={12},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1705 pages={2825--2830},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1706 year={2011}
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1707 }
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1708 </citation>
13 badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1709 <yield/>
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1710 </citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1711 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1712
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1713 <xml name="scipy_citation">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1714 <citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1715 <citation type="bibtex">
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1716 @Misc{,
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1717 author = {Eric Jones and Travis Oliphant and Pearu Peterson and others},
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1718 title = {{SciPy}: Open source scientific tools for {Python}},
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1719 year = {2001--},
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1720 url = "http://www.scipy.org/",
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1721 note = {[Online; accessed 2016-04-09]}
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1722 }
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1723 </citation>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1724 </citations>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1725 </xml>
333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1726
13 badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1727 <xml name="skrebate_citation">
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1728 <citation type="bibtex">
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1729 @article{DBLP:journals/corr/abs-1711-08477,
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1730 author = {Ryan J. Urbanowicz and
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1731 Randal S. Olson and
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1732 Peter Schmitt and
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1733 Melissa Meeker and
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1734 Jason H. Moore},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1735 title = {Benchmarking Relief-Based Feature Selection Methods},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1736 journal = {CoRR},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1737 volume = {abs/1711.08477},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1738 year = {2017},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1739 url = {http://arxiv.org/abs/1711.08477},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1740 archivePrefix = {arXiv},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1741 eprint = {1711.08477},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1742 timestamp = {Mon, 13 Aug 2018 16:46:04 +0200},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1743 biburl = {https://dblp.org/rec/bib/journals/corr/abs-1711-08477},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1744 bibsource = {dblp computer science bibliography, https://dblp.org}
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1745 }
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1746 </citation>
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1747 </xml>
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1748
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1749 <xml name="xgboost_citation">
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1750 <citation type="bibtex">
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1751 @inproceedings{Chen:2016:XST:2939672.2939785,
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1752 author = {Chen, Tianqi and Guestrin, Carlos},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1753 title = {{XGBoost}: A Scalable Tree Boosting System},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1754 booktitle = {Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1755 series = {KDD '16},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1756 year = {2016},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1757 isbn = {978-1-4503-4232-2},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1758 location = {San Francisco, California, USA},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1759 pages = {785--794},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1760 numpages = {10},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1761 url = {http://doi.acm.org/10.1145/2939672.2939785},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1762 doi = {10.1145/2939672.2939785},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1763 acmid = {2939785},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1764 publisher = {ACM},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1765 address = {New York, NY, USA},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1766 keywords = {large-scale machine learning},
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1767 }
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1768 </citation>
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1769 </xml>
badd86b9ce24 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 8cf3d813ec755166ee0bd517b4ecbbd4f84d4df1 bgruening parents: 12 diff changeset	1770
16 86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1771 <xml name="imblearn_citation">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1772 <citation type="bibtex">
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1773 @article{JMLR:v18:16-365,
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1774 author = {Guillaume Lema{{\^i}}tre and Fernando Nogueira and Christos K. Aridas},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1775 title = {Imbalanced-learn: A Python Toolbox to Tackle the Curse of Imbalanced Datasets in Machine Learning},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1776 journal = {Journal of Machine Learning Research},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1777 year = {2017},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1778 volume = {18},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1779 number = {17},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1780 pages = {1-5},
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1781 url = {http://jmlr.org/papers/v18/16-365.html}
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1782 }
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1783 </citation>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1784 </xml>
86e1e2874460 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d bgruening parents: 14 diff changeset	1785
0 333507faecab planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee bgruening parents: diff changeset	1786 </macros>

Mercurial > repos > bgruening > sklearn_model_validation

annotate main_macros.xml @ 16:86e1e2874460 draft