Mercurial > repos > bgruening > sklearn_model_validation

diff model_validation.xml @ 3:424d8d21744d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
author bgruening
date Tue, 05 Jun 2018 06:48:01 -0400
parents dd502cb0d567
children 60b8a683ba99
line wrap: on
line diff
--- a/model_validation.xml	Wed May 30 08:27:01 2018 -0400
+++ b/model_validation.xml	Tue Jun 05 06:48:01 2018 -0400
@@ -35,9 +35,15 @@
 input_type = params["input_options"]["selected_input"]
 if input_type=="tabular":
     header = 'infer' if params["input_options"]["header1"] else None
+    column_option = params["input_options"]["column_selector_options_1"]["selected_column_selector_option"]
+    if column_option == "by_index_number":
+        c = params["input_options"]["column_selector_options_1"]["col1"]
+    else:
+        c = None
     X = read_columns(
             "$input_options.infile1",
-            "$input_options.col1",
+            c = c,
+            c_option = column_option,
             sep='\t',
             header=header,
             parse_dates=True
@@ -46,9 +52,15 @@
     X = mmread(open("$input_options.infile1", 'r'))
 
 header = 'infer' if params["input_options"]["header2"] else None
+column_option = params["input_options"]["column_selector_options_2"]["selected_column_selector_option2"]
+if column_option == "by_index_number":
+    c = params["input_options"]["column_selector_options_2"]["col2"]
+else:
+    c = None
 y = read_columns(
         "$input_options.infile2",
-        "$input_options.col2",
+        c = c,
+        c_option = column_option,
         sep='\t',
         header=header,
         parse_dates=True
@@ -318,7 +330,7 @@
             <param name="has_estimator" value="yes"/>
             <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
             <param name="header1" value="true" />
-            <param name="col1" value="1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17"/>
+            <param name="selected_column_selector_option" value="all_columns"/>
             <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
             <param name="header2" value="true" />
             <param name="col2" value="1"/>
@@ -336,10 +348,10 @@
             <param name="return_type" value="best_score_"/>
             <param name="infile1" value="regression_X.tabular" ftype="tabular"/>
             <param name="header1" value="true" />
-            <param name="col1" value="1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17"/>
+            <param name="selected_column_selector_option" value="all_columns"/>
             <param name="infile2" value="regression_y.tabular" ftype="tabular"/>
             <param name="header2" value="true" />
-            <param name="col2" value="1"/>
+            <param name="selected_column_selector_option2" value="all_columns"/>
             <output name="outfile" file="mv_result07.tabular"/>
         </test>
     </tests>