Mercurial > repos > bgruening > sklearn_train_test_split

annotate train_test_split.xml @ 11:5da2217cd788 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
author bgruening
date Wed, 09 Aug 2023 13:33:25 +0000
parents ce2fd1edbc6e
children
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11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1 <tool id="sklearn_train_test_split" name="Split Dataset" version="@VERSION@" profile="@PROFILE@">
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2 <description>into training and test subsets</description>
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3 <macros>
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4 <import>main_macros.xml</import>
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5 <macro name="label_input" token_label="Select the dataset containing labels">
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6 <param name="labels" type="data" format="tabular" label="@LABEL@" />
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7 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Does the dataset contain header?" />
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8 <param name="col" type="data_column" data_ref="labels" label="Select target column" />
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9 </macro>
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10 </macros>
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11 <expand macro="python_requirements" />
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12 <expand macro="macro_stdio" />
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13 <version_command>echo "@VERSION@"</version_command>
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14 <command detect_errors="exit_code"><![CDATA[
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15 python '$__tool_directory__/train_test_split.py'
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16 --inputs '$inputs'
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17 --infile_array '$infile_array'
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18 #if $mode_selection.selected_mode == 'train_test_split' and $mode_selection.options.shuffle_selection.shuffle not in ['None', 'simple']
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19 --infile_labels '$mode_selection.options.shuffle_selection.labels'
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20 #end if
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21 #if $mode_selection.selected_mode == 'cv_splitter' and $mode_selection.cv_selector.selected_cv in ['StratifiedKFold', 'RepeatedStratifiedKFold', 'StratifiedShuffleSplit', 'OrderedKFold', 'RepeatedOrderedKFold']
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22 --infile_labels '$mode_selection.cv_selector.target_input.labels'
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23 #end if
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24 #if $mode_selection.selected_mode == 'cv_splitter' and $mode_selection.cv_selector.selected_cv in ['GroupKFold', 'GroupShuffleSplit', 'LeaveOneGroupOut', 'LeavePGroupsOut']
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25 --infile_groups '$mode_selection.cv_selector.groups_selector.infile_g'
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26 #end if
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27 --outfile_train '$out_train'
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28 --outfile_test '$out_test'
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29 ]]>
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30 </command>
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31 <configfiles>
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32 <inputs name="inputs" />
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33 </configfiles>
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34 <inputs>
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35 <param name="infile_array" type="data" format="tabular" label="Select the dataset containing array to split" help="This tool only supports to split one array at each tool run. If X, y are in separate files, the splitting task could be done by invoking this tool twice in which this input dataset is swapped while all other parameters are kept the same." />
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36 <param name="header0" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Does the dataset contain header?" />
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37 <conditional name="mode_selection">
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38 <param name="selected_mode" type="select" label="Select the splitting mode">
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39 <option value="train_test_split" selected="true">Train Test Split</option>
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40 <option value="cv_splitter">Cross-Validation Splitter</option>
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41 </param>
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42 <when value="train_test_split">
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43 <section name="options" title="Options" expanded="true">
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44 <param argument="test_size" type="float" min="0" optional="false" value="0.25" label="Test size:"
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45 help="A float number, 0.0 - 1.0, represents the proportion of the dataset to be included in the test split." />
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46 <param argument="random_state" type="integer" optional="true" value="" label="Random seed number:" />
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47 <conditional name="shuffle_selection">
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48 <param name="shuffle" type="select" label="Shuffle strategy">
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49 <option value="None">None - No shuffle</option>
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50 <option value="simple">Shuffle</option>
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51 <option value="stratified">Stratified Shuffle</option>
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52 <option value="group">Group Shuffle</option>
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53 </param>
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54 <when value="None" />
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55 <when value="simple" />
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56 <when value="stratified">
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57 <expand macro="label_input" />
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58 </when>
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59 <when value="group">
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60 <expand macro="label_input" label="Select the dataset containing groups" />
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61 </when>
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62 </conditional>
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63 </section>
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64 </when>
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65 <when value="cv_splitter">
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66 <conditional name="cv_selector">
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67 <param name="selected_cv" type="select" label="Select the cv splitter:">
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68 <option value="KFold">KFold</option>
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69 <option value="RepeatedKFold">RepeatedKFold</option>
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70 <option value="StratifiedKFold">StratifiedKFold</option>
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71 <option value="RepeatedStratifiedKFold">RepeatedStratifiedKFold</option>
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72 <option value="LeaveOneOut">LeaveOneOut</option>
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73 <option value="LeavePOut">LeavePOut</option>
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74 <option value="ShuffleSplit">ShuffleSplit</option>
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75 <option value="StratifiedShuffleSplit">StratifiedShuffleSplit</option>
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76 <option value="TimeSeriesSplit">TimeSeriesSplit</option>
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77 <option value="PredefinedSplit">PredefinedSplit</option>
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78 <option value="OrderedKFold">OrderedKFold</option>
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79 <option value="RepeatedOrderedKFold">RepeatedOrderedKFold</option>
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80 <option value="GroupKFold">GroupKFold</option>
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81 <option value="GroupShuffleSplit">GroupShuffleSplit</option>
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82 <option value="LeaveOneGroupOut">LeaveOneGroupOut</option>
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83 <option value="LeavePGroupsOut">LeavePGroupsOut</option>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
84 </param>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
85 <when value="KFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
86 <expand macro="cv_n_splits" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
87 <expand macro="cv_shuffle" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
88 <expand macro="random_state" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
89 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
90 <when value="RepeatedKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
91 <expand macro="cv_n_splits" value="5" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
92 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
93 <expand macro="random_state" />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
94 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
95 <when value="StratifiedKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
96 <expand macro="cv_n_splits" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
97 <expand macro="cv_shuffle" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
98 <expand macro="random_state" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
99 <section name="target_input" title="Target values" expanded="true">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
100 <expand macro="label_input" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
101 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
102 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
103 <when value="RepeatedStratifiedKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
104 <expand macro="cv_n_splits" value="5" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
105 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
106 <expand macro="random_state" />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
107 <section name="target_input" title="Target values" expanded="true">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
108 <expand macro="label_input" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
109 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
110 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
111 <when value="LeaveOneOut">
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
112 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
113 <when value="LeavePOut">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
114 <param argument="p" type="integer" value="" label="p" help="Integer. Size of the test sets." />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
115 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
116 <when value="ShuffleSplit">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
117 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations." />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
118 <expand macro="cv_test_size" value="0.1" />
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
119 <expand macro="random_state" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
120 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
121 <when value="StratifiedShuffleSplit">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
122 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations." />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
123 <expand macro="cv_test_size" value="0.1" />
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
124 <expand macro="random_state" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
125 <section name="target_input" title="Target values" expanded="true">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
126 <expand macro="label_input" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
127 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
128 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
129 <when value="TimeSeriesSplit">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
130 <expand macro="cv_n_splits" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
131 <param argument="max_train_size" type="integer" value="" optional="true" label="Maximum size of the training set" help="Maximum size for a single training set." />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
132 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
133 <when value="PredefinedSplit">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
134 <param argument="test_fold" type="text" value="" area="true" label="test_fold" help="List, e.g., [0, 1, -1, 1], represents two test sets, [X[0]] and [X[1], X[3]], X[2] is excluded from any test set due to '-1'." />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
135 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
136 <when value="OrderedKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
137 <expand macro="cv_n_splits" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
138 <expand macro="cv_shuffle" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
139 <expand macro="random_state" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
140 <expand macro="cv_n_stratification_bins" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
141 <section name="target_input" title="Target values" expanded="true">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
142 <expand macro="label_input" label="Select the dataset containing target values" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
143 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
144 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
145 <when value="RepeatedOrderedKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
146 <expand macro="cv_n_splits" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
147 <param argument="n_repeats" type="integer" value="5" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
148 <expand macro="random_state" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
149 <expand macro="cv_n_stratification_bins" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
150 <section name="target_input" title="Target values" expanded="true">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
151 <expand macro="label_input" label="Select the dataset containing target values" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
152 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
153 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
154 <when value="GroupKFold">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
155 <expand macro="cv_n_splits" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
156 <expand macro="cv_groups" />
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
157 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
158 <when value="GroupShuffleSplit">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
159 <expand macro="cv_n_splits" value="5" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
160 <expand macro="cv_test_size" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
161 <expand macro="random_state" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
162 <expand macro="cv_groups" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
163 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
164 <when value="LeaveOneGroupOut">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
165 <expand macro="cv_groups" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
166 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
167 <when value="LeavePGroupsOut">
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
168 <param argument="n_groups" type="integer" value="" label="n_groups" help="Number of groups (p) to leave out in the test split." />
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
169 <expand macro="cv_groups" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
170 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
171 </conditional>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
172 <param name="nth_split" type="integer" min="1" value="1" label="Type the index of split to output" help="Split index starts from 1 to total = n_splits (x n_repeats). (nth_split)" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
173 </when>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
174 </conditional>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
175 </inputs>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
176 <outputs>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
177 <data format="tabular" name="out_train" label="${tool.name} on ${on_string} (train)" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
178 <data format="tabular" name="out_test" label="${tool.name} on ${on_string} (test)" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
179 </outputs>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
180 <tests>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
181 <test>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
182 <param name="infile_array" value="regression_X.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
183 <param name="header0" value="true" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
184 <conditional name="mode_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
185 <param name="selected_mode" value="train_test_split" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
186 <section name="options">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
187 <param name="random_state" value="123" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
188 <conditional name="shuffle_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
189 <param name="shuffle" value="simple" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
190 </conditional>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
191 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
192 </conditional>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
193 <output name="out_train" file="train_test_split_train01.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
194 <output name="out_test" file="train_test_split_test01.tabular" ftype="tabular" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
195 </test>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
196 <test>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
197 <param name="infile_array" value="regression_X.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
198 <param name="header0" value="true" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
199 <conditional name="mode_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
200 <param name="selected_mode" value="cv_splitter" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
201 <conditional name="cv_selector">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
202 <param name="selected_cv" value="ShuffleSplit" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
203 <param name="random_state" value="123" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
204 <param name="n_splits" value="2" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
205 <param name="test_size" value="0.25" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
206 </conditional>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
207 </conditional>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
208 <output name="out_train" file="train_test_split_train01.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
209 <output name="out_test" file="train_test_split_test01.tabular" ftype="tabular" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
210 </test>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
211 <test>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
212 <param name="infile_array" value="imblearn_X.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
213 <param name="header0" value="false" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
214 <conditional name="mode_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
215 <param name="selected_mode" value="train_test_split" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
216 <section name="options">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
217 <param name="test_size" value="0.2" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
218 <param name="random_state" value="123" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
219 <conditional name="shuffle_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
220 <param name="shuffle" value="stratified" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
221 <param name="labels" value="imblearn_y.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
222 <param name="header1" value="false" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
223 <param name="col" value="1" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
224 </conditional>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
225 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
226 </conditional>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
227 <output name="out_train" file="train_test_split_train02.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
228 <output name="out_test" file="train_test_split_test02.tabular" ftype="tabular" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
229 </test>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
230 <test>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
231 <param name="infile_array" value="imblearn_X.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
232 <param name="header0" value="false" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
233 <conditional name="mode_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
234 <param name="selected_mode" value="cv_splitter" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
235 <conditional name="cv_selector">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
236 <param name="selected_cv" value="StratifiedShuffleSplit" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
237 <param name="random_state" value="123" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
238 <param name="test_size" value="0.2" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
239 <param name="n_splits" value="1" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
240 <section name="target_input">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
241 <param name="labels" value="imblearn_y.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
242 <param name="header1" value="false" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
243 <param name="col" value="1" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
244 </section>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
245 </conditional>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
246 </conditional>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
247 <output name="out_train" file="train_test_split_train02.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
248 <output name="out_test" file="train_test_split_test02.tabular" ftype="tabular" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
249 </test>
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
250 <test>
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
251 <param name="infile_array" value="regression_X.tabular" ftype="tabular" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
252 <param name="header0" value="true" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
253 <conditional name="mode_selection">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
254 <param name="selected_mode" value="cv_splitter" />
0
0985b0dd6f1a "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit eb703290e2589561ea215c84aa9f71bcfe1712c6"
bgruening
parents:
diff changeset
255 <conditional name="cv_selector">
11
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
256 <param name="selected_cv" value="OrderedKFold" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
257 <param name="random_state" value="123" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
258 <param name="shuffle" value="true" />
5da2217cd788 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents: 5
diff changeset
259 <param name="n_splits" value="5" />
0
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260 <section name="target_input">
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261 <param name="labels" value="regression_y.tabular" ftype="tabular" />
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262 <param name="header1" value="true" />
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263 <param name="col" value="1" />
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264 </section>
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265 </conditional>
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266 </conditional>
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267 <output name="out_train" file="train_test_split_train03.tabular" ftype="tabular" />
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268 <output name="out_test" file="train_test_split_test03.tabular" ftype="tabular" />
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269 </test>
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270 </tests>
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271 <help><![CDATA[
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272 **What it does**
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273 This tool implements splitter function and classes from `sklearn.model_selection` module to split contents (rows) of a table into two subsets for training and test, respectively . The simple train test split mode not only supports shuffle split and stratified shuffle split natively carried by the `train_test_split` function, but also gets extended to do group shuffle. The cross-validation splitter mode supports more diverse splitting strategies. Each tool run outputs one split, train and test. To get different splitting sets, for example, nested CV, multiple tool runs are needed with different `nth_split`.
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274
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275 - Train Test Split mode
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276 - direct split, no shuffle
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277 - shuffle split
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278 - stratified shuffle split
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279 - group shuffle split
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280 - Cross-Validation Splitter mode
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281 - KFold
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282 - StratifiedKFold
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283 - LeaveOneOut
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284 - LeavePOut
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285 - ...
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286
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287 Input: a tabular dataset.
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288
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289 Output: two tabular datasets containing training and test subsets, respectively.
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290
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291 ]]></help>
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292 <expand macro="sklearn_citation" />
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293 </tool>