text_processing: awk.xml annotate

annotate awk.xml @ 24:c41d78ae5fee draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31

author	bgruening
date	Wed, 04 Jun 2025 15:12:29 +0000
parents	3dc70b59608c
children

rev	line source
19 12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f bgruening parents: 16 diff changeset	1 <tool id="tp_awk_tool" name="Text reformatting" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	2 <description>with awk</description>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	3 <macros>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	4 <import>macros.xml</import>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	5 </macros>
19 12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f bgruening parents: 16 diff changeset	6 <expand macro="creator"/>
5 20344ce0c811 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 0 diff changeset	7 <requirements>
22 3dc70b59608c planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 2dc2df988bd2dde9f8d7f629b594186dbd4fdc2b bgruening parents: 19 diff changeset	8 <requirement type="package" version="5.3.1">gawk</requirement>
5 20344ce0c811 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 0 diff changeset	9 </requirements>
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	10 <version_command>awk --version \| head -n 1</version_command>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	11 <command>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	12 <![CDATA[
13 0a8c6b61f0f4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4f79443517baf378fbfe1f81be361d97f2938601 bgruening parents: 11 diff changeset	13 env -i
16 ddf54b12c295 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit ded469a802a0496c9a6a2daee7b9505bd8698802-dirty" bgruening parents: 13 diff changeset	14 \$(which awk)
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	15 --sandbox
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	16 -v FS=' '
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	17 -v OFS=' '
24 c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	18 #for $i, $r in enumerate($variables, start=1)
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	19 -v VAR$i='$r.value'
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	20 #end for
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	21 --re-interval
19 12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f bgruening parents: 16 diff changeset	22 -f '$awk_script'
12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f bgruening parents: 16 diff changeset	23 '$infile'
12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f bgruening parents: 16 diff changeset	24 > '$outfile'
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	25 ]]>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	26 </command>
5 20344ce0c811 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 0 diff changeset	27 <configfiles>
20344ce0c811 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 0 diff changeset	28 <configfile name="awk_script">$code</configfile>
20344ce0c811 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52 bgruening parents: 0 diff changeset	29 </configfiles>
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	30 <inputs>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	31 <param name="infile" format="txt" type="data" label="File to process" />
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	32 <param name="code" type="text" area="true" size="5x35" label="AWK Program" help="">
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	33 <sanitizer>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	34 <valid initial="string.printable">
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	35 <remove value="'"/>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	36 </valid>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	37 </sanitizer>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	38 </param>
24 c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	39 <repeat name="variables" min="0" default="0" title="Variables">
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	40 <param name="value" type="text" label="Value">
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	41 <validator type="regex">[a-zA-Z0-9 .]+</validator>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	42 </param>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	43 </repeat>
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	44 </inputs>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	45 <outputs>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	46 <data name="outfile" format_source="infile" metadata_source="infile"/>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	47 </outputs>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	48 <tests>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	49 <test>
24 c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	50 <param name="infile" value="awk1.txt"/>
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	51 <!-- commas are not allowed in a value field. Values with comma will be splitted -->
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	52 <param name="code" value='$2>0.5 { print $2*9"\t"$1 }' />
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	53 <output name="outfile" file="awk_results1.txt" />
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	54 </test>
24 c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	55 <test>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	56 <param name="infile" value="awk1.txt"/>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	57 <!-- commas are not allowed in a value field. Values with comma will be splitted -->
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	58 <param name="code" value='$2>VAR2 { print VAR1"\t"$2*9"\t"$1 }' />
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	59 <repeat name="variables">
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	60 <param name="value" value="xyz"/>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	61 </repeat>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	62 <repeat name="variables">
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	63 <param name="value" value="0.1"/>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	64 </repeat>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	65 <output name="outfile">
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	66 <assert_contents>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	67 <has_line_matching expression="^xyz.*" n="6"/>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	68 </assert_contents>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	69 </output>
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	70 </test>
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	71 </tests>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	72 <help>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	73 <![CDATA[
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	74 What it does
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	75
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	76 This tool runs the unix awk command on the selected data file.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	77
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	78 .. class:: infomark
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	79
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	80 TIP:
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	81
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	82 This tool uses the extended regular expression syntax (not the perl syntax).
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	83 \\d, \\w, \\s etc. are not supported.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	84
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	85
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	86 Further reading
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	87
6 60edf2f8c28f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n' bgruening parents: 5 diff changeset	88 - Awk by Example (http://www.ibm.com/developerworks/linux/library/l-awk1/index.html)
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	89 - Long AWK tutorial (http://www.grymoire.com/Unix/Awk.html)
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	90
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	91 -----
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	92
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	93 AWK programs
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	94
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	95 Most AWK programs consist of patterns (i.e. rules that match lines of text) and actions (i.e. commands to execute when a pattern matches a line).
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	96
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	97 The basic form of AWK program is::
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	98
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	99 pattern { action 1; action 2; action 3; }
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	100
24 c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	101 Variables
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	102
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	103 In order to allow parametrization in workflows, the tool allows to specify values for variables that can be used in AWK program.
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	104 that will be named VAR1, VAR2, ...
c41d78ae5fee planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 22 diff changeset	105
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	106
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	107 Pattern Examples
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	108
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	109 - $2 == "chr3" will match lines whose second column is the string 'chr3'
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	110 - $5-$4>23 will match lines that after subtracting the value of the fourth column from the value of the fifth column, gives value alrger than 23.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	111 - /AG..AG/ will match lines that contain the regular expression AG..AG (meaning the characeters AG followed by any two characeters followed by AG). (This is the way to specify regular expressions on the entire line, similar to GREP.)
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	112 - $7 ~ /A{4}U/ will match lines whose seventh column contains 4 consecutive A's followed by a U. (This is the way to specify regular expressions on a specific field.)
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	113 - 10000 < $4 && $4 < 20000 will match lines whose fourth column value is larger than 10,000 but smaller than 20,000
11 74a8bef53a00 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 0ba37c1f33eeb1c77b4d9363d681fe522d9f7fe7 bgruening parents: 8 diff changeset	114 - BEGIN will be executed once only, before the first input record is read.
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	115 - If no pattern is specified, all lines match (meaning the action part will be executed on all lines).
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	116
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	117
8 4c752559b236 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa bgruening parents: 6 diff changeset	118
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	119 Action Examples
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	120
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	121 - { print } or { print $0 } will print the entire input line (the line that matched in pattern). $0 is a special marker meaning 'the entire line'.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	122 - { print $1, $4, $5 } will print only the first, fourth and fifth fields of the input line.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	123 - { print $4, $5-$4 } will print the fourth column and the difference between the fifth and fourth column. (If the fourth column was start-position in the input file, and the fifth column was end-position - the output file will contain the start-position, and the length).
8 4c752559b236 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa bgruening parents: 6 diff changeset	124 - { FS = "," } can be used to change the field separator (delimeter) for parsing the input file.
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	125 - If no action part is specified (not even the curly brackets) - the default action is to print the entire line.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	126
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	127
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	128 AWK's Regular Expression Syntax
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	129
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	130 The select tool searches the data for lines containing or not containing a match to the given pattern. A Regular Expression is a pattern descibing a certain amount of text.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	131
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	132 - *( ) { } [ ] . ? + \ ^ $ are all special characters. \\** can be used to "escape" a special character, allowing that special character to be searched for.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	133 - ^ matches the beginning of a string(but not an internal line).
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	134 - ( .. ) groups a particular pattern.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	135 - { n or n, or n,m } specifies an expected number of repetitions of the preceding pattern.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	136
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	137 - {n} The preceding item is matched exactly n times.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	138 - {n,} The preceding item ismatched n or more times.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	139 - {n,m} The preceding item is matched at least n times but not more than m times.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	140
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	141 - [ ... ] creates a character class. Within the brackets, single characters can be placed. A dash (-) may be used to indicate a range such as a-z.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	142 - . Matches any single character except a newline.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	143 - ***** The preceding item will be matched zero or more times.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	144 - ? The preceding item is optional and matched at most once.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	145 - + The preceding item will be matched one or more times.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	146 - ^ has two meaning:
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	147 - matches the beginning of a line or string.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	148 - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	149 - $ matches the end of a line or string.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	150 - \\| Separates alternate possibilities.
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	151
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	152 ]]>
5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	153 </help>
6 60edf2f8c28f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n' bgruening parents: 5 diff changeset	154 <expand macro="citations" />
0 5314e5d6f040 Imported from capsule None bgruening parents: diff changeset	155 </tool>

Mercurial > repos > bgruening > text_processing

annotate awk.xml @ 24:c41d78ae5fee draft default tip