Mercurial > repos > bgruening > text_processing

annotate sort_rows.xml @ 17:f46f0e4f75c4 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
author bgruening
date Tue, 22 Jun 2021 16:06:48 +0000
parents 60edf2f8c28f
children 12615d397df7
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f46f0e4f75c4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
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1 <tool id="tp_sort_rows" name="Sort a row" version="@BASE_VERSION@.0+galaxy0">
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2 <description>according to their columns</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <command>
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7 <![CDATA[
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f46f0e4f75c4 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
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8 python -c 'for line in ( "\t".join(sorted(line.strip().split("\t"))) for line in open("$infile") ): print(line)' > $outfile
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9 ]]>
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10 </command>
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11 <inputs>
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12 <param format="tabular" name="infile" type="data" label="Tabular file that should be sorted"/>
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13 </inputs>
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14 <outputs>
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15 <data name="outfile" format_source="infile" metadata_source="infile"/>
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16 </outputs>
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17 <options sanitize="False"/>
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18 <tests>
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19 <test>
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20 <param name="infile" value="sort_rows1.tabular" ftype="tabular" />
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21 <output name="outfile" file="sort_rows_results1.bed"/>
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22 </test>
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23 </tests>
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24 <help>
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25 <![CDATA[
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26 .. class:: infomark
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27
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28 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*
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29
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30 **What it does**
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31
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32 That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns.
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33
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34 @REFERENCES@
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35 ]]>
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36 </help>
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60edf2f8c28f planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
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37 <expand macro="citations" />
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38 </tool>