Mercurial > repos > bgruening > trim_galore

annotate test-data/sanger_full_range_report_results1.txt @ 7:8352713cf939 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 07148c518916e16602ea26473d00358fe04bc3b6-dirty
author bgruening
date Mon, 25 Jan 2016 04:44:33 -0500
parents 11962ce40855
children b4e39d993fc8
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2 SUMMARISING RUN PARAMETERS
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3 ==========================
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4 Input filename: ./input_singles
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5 Trimming mode: single-end
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6 Trim Galore version: 0.4.0
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7 Cutadapt version: 1.8
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8 Quality Phred score cutoff: 20
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9 Quality encoding type selected: ASCII+33
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10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
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11 Maximum trimming error rate: 0.1 (default)
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12 Minimum required adapter overlap (stringency): 1 bp
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13 Minimum required sequence length before a sequence gets removed: 20 bp
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16 This is cutadapt 1.8 with Python 2.7.9
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17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_singles
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18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
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19 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute).
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21 === Summary ===
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23 Total reads processed: 2
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24 Reads with adapters: 1 (50.0%)
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25 Reads written (passing filters): 2 (100.0%)
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27 Total basepairs processed: 188 bp
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28 Quality-trimmed: 20 bp (10.6%)
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29 Total written (filtered): 167 bp (88.8%)
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31 === Adapter 1 ===
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33 Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times.
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35 No. of allowed errors:
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36 0-9 bp: 0; 10-13 bp: 1
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38 Bases preceding removed adapters:
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39 A: 0.0%
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40 C: 100.0%
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41 G: 0.0%
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42 T: 0.0%
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43 none/other: 0.0%
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45 Overview of removed sequences
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46 length count expect max.err error counts
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47 1 1 0.5 0 1
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50 RUN STATISTICS FOR INPUT FILE: ./input_singles
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51 =============================================
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52 2 sequences processed in total
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53 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
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