Mercurial > repos > bgruening > trim_galore

comparison tool_dependencies.xml @ 0:3c1664caa8e3 draft

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author bgruening
date Sat, 06 Jul 2013 09:52:23 -0400
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children 9109c2c3be1e
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-1:000000000000 0:3c1664caa8e3
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="cutadapt" version="1.1">
4 <install version="1.0">
5 <actions>
6 <action type="download_by_url">http://cutadapt.googlecode.com/files/cutadapt-1.1.tar.gz</action>
7 <action type="move_directory_files">
8 <source_directory>bin</source_directory>
9 <destination_directory>$INSTALL_DIR/bin</destination_directory>
10 </action>
11 <action type="move_directory_files">
12 <source_directory>cutadapt</source_directory>
13 <destination_directory>$INSTALL_DIR/cutadapt</destination_directory>
14 </action>
15 <action type="set_environment">
16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
17 </action>
18 </actions>
19 </install>
20 <readme>
21 </readme>
22 </package>
23 <package name="fastqc" version="0.10.1">
24 <install version="1.0">
25 <actions>
26 <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
27 <action type="move_directory_files">
28 <source_directory>../FastQC/</source_directory>
29 <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
30 </action>
31 <action type="set_environment">
32 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC</environment_variable>
33 </action>
34 </actions>
35 </install>
36 <readme>
37 FastQC needs a java Runtime Environment.
38 </readme>
39 </package>
40 </tool_dependency>
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