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view tool_dependencies.xml @ 0:3c1664caa8e3 draft

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author bgruening
date Sat, 06 Jul 2013 09:52:23 -0400
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children 9109c2c3be1e
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<?xml version="1.0"?>
<tool_dependency>
    <package name="cutadapt" version="1.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://cutadapt.googlecode.com/files/cutadapt-1.1.tar.gz</action>
                <action type="move_directory_files">
                    <source_directory>bin</source_directory>
                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
                </action>
                <action type="move_directory_files">
                    <source_directory>cutadapt</source_directory>
                    <destination_directory>$INSTALL_DIR/cutadapt</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
    <package name="fastqc" version="0.10.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.10.1.zip</action>
                <action type="move_directory_files">
                    <source_directory>../FastQC/</source_directory>
                    <destination_directory>$INSTALL_DIR/FastQC</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/FastQC</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        FastQC needs a java Runtime Environment.
        </readme>
    </package>
</tool_dependency>