Mercurial > repos > bgruening > trim_galore
diff test-data/sanger_full_range_report_results1gz.txt @ 16:cd7e644cae1d draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 276a0ec327f5369c16563696047f0d31577c353f"
| author | bgruening |
|---|---|
| date | Fri, 08 Oct 2021 09:57:52 +0000 |
| parents | 084bbd8ba7b8 |
| children |
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--- a/test-data/sanger_full_range_report_results1gz.txt Tue Jul 30 06:26:49 2019 -0400 +++ b/test-data/sanger_full_range_report_results1gz.txt Fri Oct 08 09:57:52 2021 +0000 @@ -3,11 +3,14 @@ ========================== Input filename: input_1.fastq.gz Trimming mode: single-end -Trim Galore version: 0.6.3 -Cutadapt version: 2.4 -Number of cores used for trimming: 1 +Trim Galore version: 0.6.7 +Cutadapt version: 3.4 +Python version: could not detect +Number of cores used for trimming: 4 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 +Unable to auto-detect most prominent adapter from the first specified file (count Illumina: 0, count Nextera: 0, count smallRNA: 0) +Defaulting to Illumina universal adapter ( AGATCGGAAGAGC ). Specify -a SEQUENCE to avoid this behavior). Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) Maximum trimming error rate: 0.1 (default) Minimum required adapter overlap (stringency): 1 bp @@ -15,10 +18,10 @@ Output file will be GZIP compressed -This is cutadapt 2.4 with Python 3.7.3 -Command line parameters: -j 1 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz -Processing reads on 1 core in single-end mode ... -Finished in 0.02 s (7871 us/read; 0.01 M reads/minute). +This is cutadapt 3.4 with Python 3.9.6 +Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz +Processing reads on 4 cores in single-end mode ... +Finished in 0.01 s (5217 µs/read; 0.01 M reads/minute). === Summary === @@ -32,10 +35,10 @@ === Adapter 1 === -Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times. +Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times No. of allowed errors: -0-9 bp: 0; 10-13 bp: 1 +1-9 bp: 0; 10-13 bp: 1 Bases preceding removed adapters: A: 0.0%