Mercurial > repos > bgruening > trim_galore
diff test-data/paired_example_results2.txt @ 16:cd7e644cae1d draft default tip
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 276a0ec327f5369c16563696047f0d31577c353f"
| author | bgruening |
|---|---|
| date | Fri, 08 Oct 2021 09:57:52 +0000 |
| parents | 084bbd8ba7b8 |
| children |
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--- a/test-data/paired_example_results2.txt Tue Jul 30 06:26:49 2019 -0400 +++ b/test-data/paired_example_results2.txt Fri Oct 08 09:57:52 2021 +0000 @@ -3,21 +3,23 @@ ========================== Input filename: input_1.fastq Trimming mode: paired-end -Trim Galore version: 0.6.3 -Cutadapt version: 2.4 -Number of cores used for trimming: 1 +Trim Galore version: 0.6.7 +Cutadapt version: 3.4 +Python version: could not detect +Number of cores used for trimming: 4 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 +Using Nextera adapter for trimming (count: 29). Second best hit was smallRNA (count: 0) Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) Maximum trimming error rate: 0.1 (default) Minimum required adapter overlap (stringency): 1 bp Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 2.4 with Python 3.7.3 -Command line parameters: -j 1 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq -Processing reads on 1 core in single-end mode ... -Finished in 0.01 s (75 us/read; 0.80 M reads/minute). +This is cutadapt 3.4 with Python 3.9.6 +Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq +Processing reads on 4 cores in single-end mode ... +Finished in 0.01 s (117 µs/read; 0.51 M reads/minute). === Summary === @@ -31,10 +33,10 @@ === Adapter 1 === -Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 52 times. +Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 52 times No. of allowed errors: -0-9 bp: 0; 10-12 bp: 1 +1-9 bp: 0; 10-12 bp: 1 Bases preceding removed adapters: A: 9.6% @@ -83,21 +85,23 @@ ========================== Input filename: input_2.fastq Trimming mode: paired-end -Trim Galore version: 0.6.3 -Cutadapt version: 2.4 -Number of cores used for trimming: 1 +Trim Galore version: 0.6.7 +Cutadapt version: 3.4 +Python version: could not detect +Number of cores used for trimming: 4 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 +Using Nextera adapter for trimming (count: 29). Second best hit was smallRNA (count: 0) Adapter sequence: 'CTGTCTCTTATA' (Nextera Transposase sequence; auto-detected) Maximum trimming error rate: 0.1 (default) Minimum required adapter overlap (stringency): 1 bp Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp -This is cutadapt 2.4 with Python 3.7.3 -Command line parameters: -j 1 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq -Processing reads on 1 core in single-end mode ... -Finished in 0.00 s (50 us/read; 1.19 M reads/minute). +This is cutadapt 3.4 with Python 3.9.6 +Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq +Processing reads on 4 cores in single-end mode ... +Finished in 0.03 s (256 µs/read; 0.23 M reads/minute). === Summary === @@ -111,10 +115,10 @@ === Adapter 1 === -Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 58 times. +Sequence: CTGTCTCTTATA; Type: regular 3'; Length: 12; Trimmed: 58 times No. of allowed errors: -0-9 bp: 0; 10-12 bp: 1 +1-9 bp: 0; 10-12 bp: 1 Bases preceding removed adapters: A: 12.1%