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comparison test-data/aragorn_tansl-table-1_tmRNA_tRNA.txt @ 2:358f58401cd6 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/trna_prediction commit cfb19d75629f02e0dea4475c16c016ed5510eb44
author bgruening
date Wed, 26 Jul 2017 10:14:05 -0400
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1:d788d1abe238 2:358f58401cd6
1 ------------------------------
2 ARAGORN v1.2.36 Dean Laslett
3 ------------------------------
4
5 Please reference the following paper if you use this
6 program as part of any published research.
7
8 Laslett, D. and Canback, B. (2004) ARAGORN, a
9 program for the detection of transfer RNA and
10 transfer-messenger RNA genes in nucleotide sequences.
11 Nucleic Acids Research, 32;11-16.
12
13
14 Searching for tRNA genes with no introns
15 Searching for tmRNA genes
16 Assuming circular topology, search wraps around ends
17 Searching both strands
18 Using standard genetic code
19
20
21 gi|240255695:23036500-23037000 Arabidopsis thaliana chromosome 3, complete sequence
22 501 nucleotides in sequence
23 Mean G+C content = 43.1%
24
25 1.
26
27
28
29 a
30 g-c
31 g-c
32 g+t
33 g-c
34 a-t
35 t-a
36 g-c tt
37 t gtccc a
38 ta a !!!!! g
39 a ctcg caggg c
40 t !!!! a tt
41 g gagc c
42 gta g g
43 c-gag
44 t-a
45 c-g
46 g-c
47 c-g
48 t t
49 t a
50 tgc
51
52
53
54 tRNA-Ala(tgc)
55 73 bases, %GC = 56.2
56 Sequence [381,453]
57
58
59
60 >tRNA-Ala(tgc) [381,453]
61 ggggatgtagctcatatggtagagcgctcgctttgcatgcgagaggcaca
62 gggttcgattccctgcatctcca
63
64
65
66
67 Number of tmRNA genes = 0
68
69
70 Configuration: aragorn /tmp/tmpx1qAPk/files/000/dataset_3.dat -gc1 -m -t -c -o /tmp/tmpx1qAPk/files/000/dataset_4.dat -fasta