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1 <tool id="ezlncpred" name="ezLncPred" >
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2 <description>"ezLncPred"</description>
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3 <requirements>
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4 <container type="docker">eniosorg/bim:ezlncpred</container>
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5 </requirements>
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6 <command><![CDATA[ezLncPred -i $fasta_file -o out $model
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7 #if $model =="CPAT"
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8 -p Human
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9 #end if
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10 #if $model =="CPPred"
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11 -p Human
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12 #end if
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13 #if $model =="longdist"
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14 -z 200 -p Human
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15 #end if
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16 && mv out $out
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17 ]]></command>
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18 <inputs>
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19 <param type="data" name="fasta_file" format="fasta" />
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20 <param type="select" name="model">
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21 <!--option value="CNCI">CNCI</option>
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22 <option value="CPC2">CPC2</option-->
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23 <option value="CPAT">CPAT</option>
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24 <option value="lgc">lgc</option>
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25 <option value="CPPred">CPPred</option>
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26 <!--option value="GFStack">GFStack</option-->
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27 <option value="longdist">longdist</option>
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28 <!--option value="PLEK">PLEK</option>
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29 <option value="LncADeep">LncDeep</option-->
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30 </param>
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31 </inputs>
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32 <outputs>
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33 <data name="out" format="txt" from_work_directory="out"/>
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34 </outputs>
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35 </tool>
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