Mercurial > repos > biancakrieger > nc_rna_enios
annotate lncadeep.xml @ 2:b52bf1d87b7a draft
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| author | biancakrieger |
|---|---|
| date | Wed, 21 Apr 2021 09:56:57 +0000 |
| parents | |
| children |
| rev | line source |
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| 2 | 1 <tool id="lncadeep" name="LncADeep" > |
| 2 <description>"LncADeep"</description> | |
| 3 <requirements> | |
| 4 <container type="docker">bianca7/lncadeep</container> | |
| 5 </requirements> | |
| 6 <command><![CDATA[python /usr/local/lib/python2.7/site-packages/LncADeep/LncADeep.py -MODE anno | |
| 7 -o test | |
| 8 -l $RNA_FILE | |
| 9 -p $PROTEIN_FILE | |
| 10 -a 1 | |
| 11 && tar -cvf results.tar test_LncADeep_anno_results && mv results.tar $results | |
| 12 ]]></command> | |
| 13 <inputs> | |
| 14 <param type="data" name="RNA_FILE" format="fasta" label="RNA sequences in FASTA format" /> | |
| 15 <param type="data" name="PROTEIN_FILE" format="fasta" label="protein sequences in FASTA format" /> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="results" format="tar" /> | |
| 19 </outputs> | |
| 20 </tool> |