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comparison ezlncpred.xml @ 5:d72d2ed9efac draft default tip

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author biancakrieger
date Wed, 21 Apr 2021 10:35:29 +0000
parents 1831c7f4c173
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4:1831c7f4c173 5:d72d2ed9efac
1 <tool id="ezlncpred" name="ezLncPred" >
2 <description>"ezLncPred"</description>
3 <requirements>
4 <container type="docker">eniosorg/bim:ezlncpred</container>
5 </requirements>
6 <command><![CDATA[ezLncPred -i $fasta_file -o out $model
7 #if $model =="CPAT"
8 -p Human
9 #end if
10 #if $model =="CPPred"
11 -p Human
12 #end if
13 #if $model =="longdist"
14 -z 200 -p Human
15 #end if
16 && mv out $out
17 ]]></command>
18 <inputs>
19 <param type="data" name="fasta_file" format="fasta" />
20 <param type="select" name="model">
21 <!--option value="CNCI">CNCI</option>
22 <option value="CPC2">CPC2</option-->
23 <option value="CPAT">CPAT</option>
24 <option value="lgc">lgc</option>
25 <option value="CPPred">CPPred</option>
26 <!--option value="GFStack">GFStack</option-->
27 <option value="longdist">longdist</option>
28 <!--option value="PLEK">PLEK</option>
29 <option value="LncADeep">LncDeep</option-->
30 </param>
31 </inputs>
32 <outputs>
33 <data name="out" format="txt" from_work_directory="out"/>
34 </outputs>
35 </tool>