Mercurial > repos > big-tiandm > degseq

comparison tool_dependencies.xml @ 19:32970aaa6af8 draft

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Uploaded
author big-tiandm
date Sat, 15 Nov 2014 00:45:15 -0500
parents 531d88d40600
children 94bc6d663e36
comparison
equal deleted inserted replaced
18:322e8190191b 19:32970aaa6af8
4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment> 5 </set_environment>
6 6
7 <package name="R" version="3.0.1"> 7 <package name="R" version="3.0.1">
8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/> 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
9 </package>
10 9
11 <package name="degseq" version="1.20.0">
12 <install version="1.0"> 10 <install version="1.0">
13 <actions> 11 <actions>
14 <action type="set_environment_for_install"> 12 <action type="set_environment_for_install">
15 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"> 13 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
16 <package name="R" version="3.0.1" /> 14 <package name="R" version="3.0.1" />
17 </repository> 15 </repository>
18 </action> 16 </action>
19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 17 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
20 18
21 19 </actions>
22
23 <action type="set_environment">
24 <environment_variable name="PATH" action="prepend_to">$R_PATH</environment_variable>
25 </action>
26
27 </actions>
28 </install> 20 </install>
29
30
31 </package> 21 </package>
32 22
33 23
34
35 </tool_dependency> 24 </tool_dependency>